MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.5 nTPM
HPA Brain:46.8 nTPM
GTEx:57.5 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:32.0 nTPM
Mouse:52.0 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.1
2586 Male, age 75, left hemisphere 58.8
1827 Male, age 72, unknown 47.1
2828 Female, age 72, unknown 45.8
2666 Male, age 74, left hemisphere 45.3
2019 Male, age 18, unknown 44.5
1870 Female, age 42, unknown 42.2
2411 Female, age 72, unknown 40.3
1833 Male, age 53, unknown 37.9
1830 Male, age 51, unknown 36.5
2219 Male, age 76, both hemispheres 32.9
Dorsal raphe nucleus
nTPM: 44.4
2298 Female, age 72, unknown 49.1
2047 Male, age 72, unknown 48.8
1828 Male, age 53, unknown 44.1
2750 Male, age 76, both hemispheres 40.9
2016 Female, age 72, unknown 39.3
Inferior colliculus
nTPM: 43.1
2849 Male, age 72, unknown 43.9
2097 Female, age 72, unknown 43.5
1890 Male, age 53, unknown 42.6
1848 Female, age 42, unknown 42.4
Median raphe nucleus
nTPM: 42.2
2220 Male, age 76, midline 42.2
Periaquaductal grey, anterior
nTPM: 46.8
1947 Male, age 18, unknown 50.2
1795 Male, age 51, unknown 47.2
2502 Female, age 75, unknown 43.1
Periaquaductal grey, dorsal
nTPM: 43.7
1840 Male, age 53, unknown 49.7
2850 Male, age 76, both hemispheres 45.5
1831 Male, age 72, unknown 41.2
2464 Female, age 72, unknown 38.4
Periaquaductal grey, lateral
nTPM: 40.1
2140 Male, age 76, both hemispheres 41.5
2053 Male, age 18, unknown 41.4
2272 Male, age 74, both hemispheres 37.4
Pretectal area
nTPM: 44.3
1817 Female, age 42, unknown 52.6
1816 Male, age 51, unknown 52.0
2007 Male, age 72, unknown 49.8
1944 Female, age 72, unknown 48.9
1815 Male, age 53, unknown 44.7
2667 Female, age 75, unknown 42.8
2825 Male, age 18, unknown 42.0
2407 Male, age 75, both hemispheres 41.5
2224 Female, age 72, unknown 40.4
2273 Male, age 74, both hemispheres 40.4
2316 Male, age 76, right hemisphere 32.5
Red nucleus
nTPM: 39.0
2584 Male, age 75, left hemisphere 48.6
1821 Female, age 72, unknown 43.2
2588 Male, age 74, left hemisphere 41.9
2725 Female, age 75, unknown 41.0
2785 Male, age 18, unknown 40.6
1865 Male, age 51, unknown 39.8
1954 Female, age 42, unknown 37.8
2769 Male, age 72, unknown 37.3
2227 Male, age 72, unknown 35.9
1904 Male, age 53, unknown 35.4
2823 Male, age 76, right hemisphere 33.9
2503 Female, age 72, unknown 33.1
Substantia nigra
nTPM: 46.5
1889 Female, age 72, unknown 49.9
1916 Female, age 42, unknown 49.8
1941 Male, age 53, unknown 49.8
2583 Male, age 75, right hemisphere 49.2
2665 Male, age 74, both hemispheres 47.8
1851 Male, age 51, unknown 46.4
2409 Female, age 72, unknown 46.2
2241 Male, age 72, unknown 43.7
2590 Female, age 75, unknown 42.9
2699 Male, age 18, unknown 39.3
Superior colliculus
nTPM: 42.5
2664 Male, age 75, both hemispheres 51.7
2668 Female, age 75, unknown 48.2
1796 Male, age 53, unknown 44.3
2261 Male, age 18, unknown 43.0
2087 Female, age 72, unknown 42.7
1839 Male, age 51, unknown 42.3
2587 Male, age 74, left hemisphere 40.4
1895 Male, age 76, right hemisphere 38.3
1995 Male, age 72, unknown 37.8
1913 Female, age 42, unknown 36.1
Ventral tegmental area
nTPM: 41.7
2410 Female, age 72, unknown 46.9
1915 Female, age 42, unknown 46.3
2218 Male, age 76, both hemispheres 41.5
1942 Male, age 51, unknown 39.7
2021 Male, age 53, unknown 39.6
2223 Female, age 72, unknown 36.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.5
Samples: 139

Max nTPM: 129.1
Min nTPM: 31.2
Std nTPM: 13.4
Median nTPM: 54.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 129.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 108.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 92.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 87.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 85.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 85.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 83.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 81.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 79.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 79.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 77.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.8
FF:10158-103A5 76 years, female 15.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.0
Samples: 4

Max nTPM: 33.3
Min nTPM: 29.5
Sample A Female 33.3
Sample B Female 29.5
Sample C Male 32.4
Sample D Male 32.8
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 37.5
Min nTPM: 26.0
Sample A Female 37.5
Sample B Female 30.0
Sample C Male 27.9
Sample D Male 26.0
Periaqueductal gray
nTPM: 29.3
Samples: 3

Max nTPM: 32.0
Min nTPM: 27.9
Sample B Female 27.9
Sample C Male 32.0
Sample D Male 27.9
Superior colliculi
nTPM: 28.8
Samples: 4

Max nTPM: 30.7
Min nTPM: 26.7
Sample A Female 28.1
Sample B Female 26.7
Sample C Male 29.6
Sample D Male 30.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 52.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.1
Samples: 4

Max nTPM: 55.5
Min nTPM: 48.1
Sample A Male 53.4
Sample B Male 51.3
Sample C Female 48.1
Sample D Female 55.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
678686 Antisense, RP_040914_02_D05, Mouse strain C57BL/6J (56 days, male) 0.7

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