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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:135.3 nTPM
HPA Brain:137.8 nTPM
GTEx:135.3 nTPM
FANTOM5:70.3 Scaled Tags Per Million
Pig:39.4 nTPM
Mouse:26.3 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.8
Sample id Sample description nTPM
Amygdala
nTPM: 137.8
2695 Female, age 67, right hemisphere 161.8
2514 Male, age 75, right hemisphere 141.7
1987 Female, age 91, left hemisphere 133.5
2517 Female, age 94, left hemisphere 132.8
2814 Male, age 76, right hemisphere 119.3
Basal amygdala
nTPM: 132.1
2609 Male, age 75, right hemisphere 226.2
2243 Female, age 91, right hemisphere 135.7
2110 Male, age 80, left hemisphere 125.8
1955 Male, age 76, both hemispheres 109.5
2685 Female, age 94, left hemisphere 107.8
2827 Female, age 67, right hemisphere 87.4
Central amygdala
nTPM: 136.4
2515 Male, age 75, right hemisphere 162.1
1905 Male, age 76, both hemispheres 147.0
2826 Female, age 94, left hemisphere 139.0
2239 Male, age 80, left hemisphere 119.1
2701 Female, age 91, right hemisphere 114.9
Corticomedial amygdala
nTPM: 120.1
2428 Male, age 75, right hemisphere 185.0
2829 Male, age 80, left hemisphere 137.2
2242 Female, age 91, right hemisphere 113.2
2429 Female, age 94, left hemisphere 105.1
2535 Female, age 67, right hemisphere 93.5
2240 Male, age 76, both hemispheres 86.9
Lateral amygdala
nTPM: 136.2
2516 Male, age 75, right hemisphere 207.7
2256 Male, age 80, left hemisphere 144.1
2255 Female, age 91, right hemisphere 138.9
1883 Male, age 76, both hemispheres 118.9
2534 Female, age 94, left hemisphere 118.6
2830 Female, age 67, right hemisphere 88.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 135.3
Samples: 152

Max nTPM: 323.1
Min nTPM: 3.6
Std nTPM: 55.9
Median nTPM: 132.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 323.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 287.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 286.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 279.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 269.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 265.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 265.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 241.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 237.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 226.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 224.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 220.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 219.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 218.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 213.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 213.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 211.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 209.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 207.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 200.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 198.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 193.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 193.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 193.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 191.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 189.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 189.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 184.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 179.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 179.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 175.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 174.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 173.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 170.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 169.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 168.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 159.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 158.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 157.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 156.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 156.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 154.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 153.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 152.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 151.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 149.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 147.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 146.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 146.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 145.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 143.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 143.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 142.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 141.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 141.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 139.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 139.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 138.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 138.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 138.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 137.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 137.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 137.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 137.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 136.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 136.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 135.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 135.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 134.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 134.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 133.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 133.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 133.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 133.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 132.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 132.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 131.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 130.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 129.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 129.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 128.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 127.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 127.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 124.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 124.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 123.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 122.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 122.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 120.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 116.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 115.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 113.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 113.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 112.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 112.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 112.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 111.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 111.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 109.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 109.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 109.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 108.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 107.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 105.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 104.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 103.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 103.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 102.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 101.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 101.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 100.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 99.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 98.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 97.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 97.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 97.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 96.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 96.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 94.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 91.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 88.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 88.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 85.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 85.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 85.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 84.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 84.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 83.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 81.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 81.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 79.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 79.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 77.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 77.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 73.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 73.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 70.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 63.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 62.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 59.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 57.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 52.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 50.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 48.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 45.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 43.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 35.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 23.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

70.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 70.3
FF:10151-102I7 76 years, female 70.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.4
Pig sample Sample description nTPM
Amygdala
nTPM: 39.4
Samples: 4

Max nTPM: 43.1
Min nTPM: 35.7
Sample A Female 43.1
Sample B Female 35.7
Sample C Male 41.5
Sample D Male 37.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 26.3
Samples: 4

Max nTPM: 27.5
Min nTPM: 25.2
Sample A Male 25.9
Sample B Male 26.7
Sample C Female 27.5
Sample D Female 25.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
70474011 Antisense, RP_050614_04_G02, Mouse strain C57BL/6J (56 days, male) 0.3

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