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SNTA1
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  • SNTA1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:164.9 nTPM
FANTOM5:67.8 Scaled Tags Per Million
Pig:35.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA067154Antibody CAB037059
Glial cells HighMedium
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 164.9
Samples: 246

Max nTPM: 452.6
Min nTPM: 34.7
Std nTPM: 77.7
Median nTPM: 146.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 452.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 416.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 415.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 412.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 411.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 397.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 359.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 347.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 344.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 340.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 336.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 332.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 330.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 326.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 316.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 305.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 303.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 290.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 287.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 285.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 279.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 277.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 275.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 272.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 269.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 266.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 262.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 257.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 255.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 253.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 247.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 244.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 244.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 243.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 241.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 239.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 239.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 237.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 232.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 231.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 231.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 230.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 229.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 226.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 225.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 225.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 224.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 223.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 220.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 219.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 217.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 215.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 215.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 213.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 210.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 210.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 209.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 209.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 207.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 206.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 203.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 203.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 201.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 200.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 199.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 199.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 197.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 196.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 195.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 193.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 192.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 192.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 192.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 190.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 189.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 188.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 187.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 187.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 184.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 183.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 182.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 181.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 179.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 179.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 178.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 177.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 177.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 176.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 176.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 175.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 175.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 175.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 174.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 171.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 170.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 170.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 169.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 168.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 168.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 165.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 164.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 164.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 163.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 163.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 163.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 161.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 160.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 157.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 157.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 157.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 156.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 154.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 153.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 153.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 151.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 151.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 150.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 150.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 150.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 148.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 147.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 147.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 147.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 146.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 146.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 144.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 144.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 144.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 142.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 142.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 141.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 141.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 140.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 140.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 140.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 140.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 139.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 138.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 138.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 137.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 137.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 137.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 136.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 136.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 136.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 134.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 134.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 133.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 131.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 131.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 129.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 129.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 129.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 129.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 129.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 129.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 128.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 128.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 127.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 126.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 126.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 126.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 126.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 123.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 122.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 122.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 122.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 122.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 120.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 120.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 120.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 119.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 119.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 119.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 118.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 117.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 117.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 116.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 115.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 115.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 115.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 114.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 113.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 112.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 110.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 110.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 109.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 109.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 108.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 108.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 107.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 105.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 105.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 105.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 104.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 104.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 103.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 103.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 102.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 101.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 100.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 100.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 99.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 99.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 98.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 98.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 96.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 95.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 92.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 92.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 91.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 91.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 90.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 90.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 88.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 87.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 85.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 85.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 84.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 83.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 83.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 83.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 82.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 82.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 80.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 77.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 74.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 74.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 74.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 73.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 72.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 69.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 68.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 67.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 67.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 66.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 65.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 64.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 57.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 52.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 51.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 50.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 44.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 41.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 38.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 34.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

67.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 67.8
FF:10164-103B2 76 years, female 67.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.6
Pig sample Sample description nTPM
Caudate
nTPM: 35.6
Samples: 4

Max nTPM: 41.9
Min nTPM: 28.7
Sample A Female 28.7
Sample B Female 41.9
Sample C Male 39.6
Sample D Male 32.3

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