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  • CHMP4B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:137.3 nTPM
HPA Brain:78.6 nTPM
GTEx:137.3 nTPM
FANTOM5:139.9 Scaled Tags Per Million
Pig:73.4 nTPM
Mouse:180.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.6
Sample id Sample description nTPM
Amygdala
nTPM: 78.6
2514 Male, age 75, right hemisphere 85.3
2814 Male, age 76, right hemisphere 82.9
2695 Female, age 67, right hemisphere 79.6
2517 Female, age 94, left hemisphere 75.7
1987 Female, age 91, left hemisphere 69.4
Basal amygdala
nTPM: 73.9
2609 Male, age 75, right hemisphere 82.5
2243 Female, age 91, right hemisphere 79.2
2110 Male, age 80, left hemisphere 74.1
1955 Male, age 76, both hemispheres 70.2
2827 Female, age 67, right hemisphere 69.5
2685 Female, age 94, left hemisphere 67.6
Central amygdala
nTPM: 76.3
2826 Female, age 94, left hemisphere 80.6
2239 Male, age 80, left hemisphere 75.7
2701 Female, age 91, right hemisphere 75.6
1905 Male, age 76, both hemispheres 75.2
2515 Male, age 75, right hemisphere 74.6
Corticomedial amygdala
nTPM: 73.7
2829 Male, age 80, left hemisphere 78.5
2428 Male, age 75, right hemisphere 74.7
2535 Female, age 67, right hemisphere 73.1
2242 Female, age 91, right hemisphere 73.0
2240 Male, age 76, both hemispheres 71.7
2429 Female, age 94, left hemisphere 70.9
Lateral amygdala
nTPM: 72.5
2516 Male, age 75, right hemisphere 82.6
2534 Female, age 94, left hemisphere 80.1
1883 Male, age 76, both hemispheres 78.2
2830 Female, age 67, right hemisphere 71.4
2255 Female, age 91, right hemisphere 62.7
2256 Male, age 80, left hemisphere 60.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 137.3
Samples: 152

Max nTPM: 356.4
Min nTPM: 92.6
Std nTPM: 32.3
Median nTPM: 133.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 356.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 274.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 237.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 228.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 198.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 197.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 195.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 193.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 193.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 179.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 177.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 169.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 168.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 166.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 165.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 165.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 164.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 161.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 161.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 161.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 159.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 159.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 159.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 157.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 155.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 154.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 154.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 154.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 154.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 153.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 152.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 150.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 149.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 149.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 149.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 149.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 148.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 148.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 147.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 146.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 146.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 145.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 145.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 144.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 144.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 142.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 142.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 142.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 141.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 141.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 141.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 141.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 140.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 140.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 140.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 140.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 140.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 140.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 140.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 139.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 139.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 139.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 139.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 138.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 137.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 137.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 136.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 136.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 136.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 136.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 136.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 134.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 134.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 134.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 133.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 133.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 133.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 132.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 132.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 132.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 132.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 131.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 130.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 130.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 130.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 129.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 129.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 127.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 127.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 127.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 127.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 126.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 126.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 125.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 124.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 124.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 124.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 124.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 124.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 123.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 123.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 123.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 122.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 122.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 122.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 120.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 120.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 120.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 120.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 119.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 119.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 118.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 118.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 117.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 116.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 116.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 116.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 115.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 113.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 113.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 112.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 112.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 111.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 111.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 111.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 111.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 110.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 110.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 108.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 108.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 107.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 107.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 106.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 106.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 106.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 106.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 105.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 104.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 103.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 103.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 103.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 103.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 102.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 99.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 98.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 94.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 93.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 92.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

139.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 139.9
FF:10151-102I7 76 years, female 139.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.4
Pig sample Sample description nTPM
Amygdala
nTPM: 73.4
Samples: 4

Max nTPM: 95.4
Min nTPM: 63.1
Sample A Female 95.4
Sample B Female 68.8
Sample C Male 63.1
Sample D Male 66.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 180.7
Samples: 4

Max nTPM: 191.7
Min nTPM: 170.3
Sample A Male 183.2
Sample B Male 177.6
Sample C Female 191.7
Sample D Female 170.3

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