MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.8 nTPM
HPA Brain:139.1 nTPM
GTEx:35.8 nTPM
FANTOM5:3.2 Scaled Tags Per Million
Pig:53.6 nTPM
Mouse:107.0 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 139.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.3
2219 Male, age 76, both hemispheres 112.3
1827 Male, age 72, unknown 101.5
2666 Male, age 74, left hemisphere 91.2
2828 Female, age 72, unknown 80.2
2411 Female, age 72, unknown 69.8
1870 Female, age 42, unknown 67.1
1833 Male, age 53, unknown 56.5
2586 Male, age 75, left hemisphere 50.2
1830 Male, age 51, unknown 48.3
2019 Male, age 18, unknown 25.7
Dorsal raphe nucleus
nTPM: 79.5
2298 Female, age 72, unknown 111.1
2750 Male, age 76, both hemispheres 88.1
2047 Male, age 72, unknown 86.3
1828 Male, age 53, unknown 59.1
2016 Female, age 72, unknown 53.2
Inferior colliculus
nTPM: 64.9
2097 Female, age 72, unknown 79.5
2849 Male, age 72, unknown 64.9
1848 Female, age 42, unknown 64.2
1890 Male, age 53, unknown 51.0
Median raphe nucleus
nTPM: 139.1
2220 Male, age 76, midline 139.1
Periaquaductal grey, anterior
nTPM: 116.7
2502 Female, age 75, unknown 124.5
1795 Male, age 51, unknown 116.5
1947 Male, age 18, unknown 109.1
Periaquaductal grey, dorsal
nTPM: 80.7
1840 Male, age 53, unknown 99.2
1831 Male, age 72, unknown 79.3
2850 Male, age 76, both hemispheres 78.9
2464 Female, age 72, unknown 65.1
Periaquaductal grey, lateral
nTPM: 70.1
2053 Male, age 18, unknown 87.2
2140 Male, age 76, both hemispheres 72.0
2272 Male, age 74, both hemispheres 51.3
Pretectal area
nTPM: 75.1
2224 Female, age 72, unknown 111.3
1816 Male, age 51, unknown 108.1
2825 Male, age 18, unknown 94.5
1944 Female, age 72, unknown 85.9
2316 Male, age 76, right hemisphere 77.3
2667 Female, age 75, unknown 77.2
1815 Male, age 53, unknown 69.2
2007 Male, age 72, unknown 63.6
1817 Female, age 42, unknown 58.6
2407 Male, age 75, both hemispheres 48.5
2273 Male, age 74, both hemispheres 31.7
Red nucleus
nTPM: 31.1
2584 Male, age 75, left hemisphere 51.3
2503 Female, age 72, unknown 35.7
1821 Female, age 72, unknown 32.7
2227 Male, age 72, unknown 31.5
1954 Female, age 42, unknown 31.2
2785 Male, age 18, unknown 30.7
2769 Male, age 72, unknown 30.6
1904 Male, age 53, unknown 27.7
2725 Female, age 75, unknown 27.2
2588 Male, age 74, left hemisphere 25.8
2823 Male, age 76, right hemisphere 24.9
1865 Male, age 51, unknown 24.0
Substantia nigra
nTPM: 88.8
1916 Female, age 42, unknown 138.8
2665 Male, age 74, both hemispheres 120.9
1941 Male, age 53, unknown 107.4
1851 Male, age 51, unknown 103.8
2241 Male, age 72, unknown 92.8
2699 Male, age 18, unknown 91.5
1889 Female, age 72, unknown 71.2
2409 Female, age 72, unknown 69.1
2590 Female, age 75, unknown 49.4
2583 Male, age 75, right hemisphere 43.0
Superior colliculus
nTPM: 75.4
2668 Female, age 75, unknown 115.4
1796 Male, age 53, unknown 112.7
2261 Male, age 18, unknown 101.9
2087 Female, age 72, unknown 83.4
2664 Male, age 75, both hemispheres 73.0
1895 Male, age 76, right hemisphere 66.9
1839 Male, age 51, unknown 65.0
2587 Male, age 74, left hemisphere 48.6
1913 Female, age 42, unknown 47.8
1995 Male, age 72, unknown 39.0
Ventral tegmental area
nTPM: 94.7
2218 Male, age 76, both hemispheres 138.6
1915 Female, age 42, unknown 101.4
2410 Female, age 72, unknown 96.3
1942 Male, age 51, unknown 90.5
2021 Male, age 53, unknown 77.0
2223 Female, age 72, unknown 64.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.8
Samples: 139

Max nTPM: 117.6
Min nTPM: 1.2
Std nTPM: 26.8
Median nTPM: 30.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 117.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 115.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 107.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 104.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 101.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 88.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 87.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 86.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 83.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 83.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 77.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.2
FF:10158-103A5 76 years, female 3.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 53.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.0
Samples: 4

Max nTPM: 91.3
Min nTPM: 14.1
Sample A Female 70.3
Sample B Female 36.1
Sample C Male 91.3
Sample D Male 14.1
Midbrain
nTPM: 53.6
Samples: 4

Max nTPM: 86.8
Min nTPM: 10.9
Sample A Female 10.9
Sample B Female 45.0
Sample C Male 86.8
Sample D Male 71.7
Periaqueductal gray
nTPM: 46.6
Samples: 3

Max nTPM: 63.1
Min nTPM: 37.3
Sample B Female 39.4
Sample C Male 63.1
Sample D Male 37.3
Superior colliculi
nTPM: 40.4
Samples: 4

Max nTPM: 47.0
Min nTPM: 24.5
Sample A Female 44.3
Sample B Female 24.5
Sample C Male 45.8
Sample D Male 47.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 107.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.0
Samples: 4

Max nTPM: 117.1
Min nTPM: 99.7
Sample A Male 117.1
Sample B Male 105.0
Sample C Female 99.7
Sample D Female 106.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
69013010 Antisense, RP_050309_01_H01, Mouse strain C57BL/6J (56 days, male) 14.8
73592527 Antisense, RP_051017_01_E03, Mouse strain C57BL/6J (56 days, male) 13.0
71161411 Antisense, RP_050810_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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