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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:66.2 nTPM
HPA Brain:50.9 nTPM
GTEx:66.2 nTPM
FANTOM5:42.4 Scaled Tags Per Million
Pig:37.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 45.6
1981 Female, age 72, midline 59.2
2816 Male, age 47, midline 44.0
2048 Male, age 55, midline 43.7
2194 Female, age 79, both hemispheres 42.2
2565 Male, age 75, midline 39.1
Cervical spinal cord, dorsal horn
nTPM: 50.9
2296 Male, age 66, both hemispheres 70.3
2173 Female, age 72, unknown 65.6
2069 Male, age 47, both hemispheres 53.7
1877 Male, age 55, unknown 42.7
2297 Male, age 75, both hemispheres 40.5
2721 Male, age 90, both hemispheres 32.5
Cervical spinal cord, ventral horn
nTPM: 44.5
2098 Female, age 72, unknown 54.2
2068 Male, age 55, unknown 47.8
2480 Male, age 75, both hemispheres 47.2
2809 Male, age 90, both hemispheres 41.6
2820 Female, age 79, both hemispheres 38.5
2295 Male, age 66, both hemispheres 37.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 66.2
Samples: 159

Max nTPM: 102.1
Min nTPM: 38.6
Std nTPM: 12.7
Median nTPM: 64.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 102.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 97.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 96.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 92.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 92.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 90.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 88.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 88.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 88.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 87.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 87.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 86.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 85.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 85.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 85.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 83.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 83.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 83.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 82.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 82.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 82.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 82.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 81.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 81.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 80.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 80.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 79.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 79.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 79.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 78.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 78.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 78.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 78.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 77.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 77.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 77.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 77.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 75.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 75.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 75.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 74.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 74.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 73.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 72.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 72.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 72.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 72.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 72.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 71.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 71.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 71.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 70.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 70.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 70.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 70.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 70.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 70.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 69.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 69.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 69.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 69.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 69.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 69.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 68.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 68.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 68.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 67.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 67.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 67.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 66.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 66.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 66.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 65.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 65.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 65.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 65.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 65.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 65.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 65.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 64.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 64.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 64.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 63.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 63.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 63.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 63.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 63.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 62.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 62.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 62.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 62.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 62.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 61.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 61.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 61.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 61.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 61.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 60.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 60.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 60.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 60.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 60.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 60.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 60.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 59.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 59.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 59.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 59.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 59.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 59.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 59.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 58.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 58.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 58.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 57.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 56.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 56.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 56.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 56.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 55.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 55.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 55.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 55.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 55.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 55.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 54.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 54.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 54.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 54.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 53.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 53.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 53.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 53.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 53.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 52.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 52.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 52.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 52.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 52.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 52.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 51.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 51.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 51.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 51.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 50.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 49.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 49.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 49.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 48.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 48.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 48.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 47.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 47.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 45.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 43.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 41.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 40.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 38.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

42.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 42.4
FF:10159-103A6 76 years, female 44.6
FF:10181-103D1 60 years, female 40.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 30.1
Samples: 4

Max nTPM: 32.3
Min nTPM: 26.8
Sample A Female 32.3
Sample B Female 29.2
Sample C Male 26.8
Sample D Male 32.2
Ventral spinal cord
nTPM: 37.2
Samples: 4

Max nTPM: 42.5
Min nTPM: 33.3
Sample A Female 36.1
Sample B Female 42.5
Sample C Male 36.9
Sample D Male 33.3

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