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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:86.1 nTPM
FANTOM5:131.4 Scaled Tags Per Million
Pig:264.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002877Antibody HPA064724
Glial cells MediumNot detected
Neuronal cells LowHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 86.1
Samples: 246

Max nTPM: 200.2
Min nTPM: 33.3
Std nTPM: 26.7
Median nTPM: 83.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 200.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 172.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 164.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 147.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 147.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 141.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 140.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 139.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 137.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 137.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 137.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 136.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 135.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 134.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 134.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 132.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 132.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 131.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 128.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 126.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 125.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 125.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 124.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 122.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 121.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 120.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 119.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 119.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 119.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 115.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 115.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 115.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 115.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 114.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 113.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 112.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 112.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 112.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 111.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 111.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 110.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 110.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 110.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 109.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 109.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 109.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 109.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 109.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 108.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 108.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 108.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 107.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 107.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 107.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 107.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 106.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 106.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 106.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 105.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 105.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 103.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 103.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 103.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 102.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 101.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 99.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 97.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 97.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 97.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 97.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 97.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 97.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 97.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 97.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 96.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 96.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 96.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 96.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 95.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 95.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 95.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 95.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 95.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 94.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 94.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 93.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 92.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 91.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 91.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 91.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 90.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 90.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 89.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 89.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 89.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 89.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 88.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 88.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 88.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 88.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 88.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 88.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 88.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 88.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 88.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 87.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 87.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 86.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 86.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 86.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 86.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 85.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 85.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 85.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 85.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 85.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 85.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 84.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 84.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 84.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 84.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 84.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 83.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 83.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 83.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 83.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 83.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 81.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 81.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 81.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 80.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 80.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 79.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 79.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 79.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 79.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 79.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 79.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 78.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 78.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 78.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 78.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 78.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 78.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 78.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 78.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 77.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 77.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 77.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 77.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 77.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 77.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 77.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 77.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 76.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 76.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 76.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 75.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 75.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 74.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 74.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 73.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 73.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 73.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 73.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 72.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 72.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 72.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 71.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 71.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 71.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 70.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 70.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 70.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 70.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 69.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 69.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 69.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 67.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 67.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 67.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 67.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 67.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 66.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 66.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 64.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 64.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 64.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 63.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 63.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 63.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 62.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 62.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 62.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 62.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 62.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 62.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 62.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 62.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 62.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 61.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 61.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 61.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 61.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 61.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 61.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 60.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 60.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 59.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 59.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 59.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 59.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 58.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 58.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 58.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 58.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 57.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 57.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 56.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 56.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 55.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 54.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 54.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 53.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 53.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 53.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 52.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 52.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 52.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 51.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 51.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 49.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 48.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 47.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 46.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 45.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 45.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 44.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 42.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 42.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 40.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 39.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 38.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 35.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 33.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 33.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

131.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 131.4
FF:10164-103B2 76 years, female 131.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.9
Pig sample Sample description nTPM
Caudate
nTPM: 264.9
Samples: 4

Max nTPM: 291.7
Min nTPM: 243.2
Sample A Female 259.7
Sample B Female 264.8
Sample C Male 291.7
Sample D Male 243.2

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