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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:51.0 nTPM
HPA:12.2 nTPM
GTEx:51.0 nTPM
FANTOM5:31.3 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.2
overview
Male, age 65
Small intestine sample 232
nTPM: 6.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 10.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 17.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 14.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 51.0
Samples: 187

Max nTPM: 211.0
Min nTPM: 8.1
Std nTPM: 39.0
Median nTPM: 37.1
GTEX-1192X-2526-SM-59868 50-59 years, male 211.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 179.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 178.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 171.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 164.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 161.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 161.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 151.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 121.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 116.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 116.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 114.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 113.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 111.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 110.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 110.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 108.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 107.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 107.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 107.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 106.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 102.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 100.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 100.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 99.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 99.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 98.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 95.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 94.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 90.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 89.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 89.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 87.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 87.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 85.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 84.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 82.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 82.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 80.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 79.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 79.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 75.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 75.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 73.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 73.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 72.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 67.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 67.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 64.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 64.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 63.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 63.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 62.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 62.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 61.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 60.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 59.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 57.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 57.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 57.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 56.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 55.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 55.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 54.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 52.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 51.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 48.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 48.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 47.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 47.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 47.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 46.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 45.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 45.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 45.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 45.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 44.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 44.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 43.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 43.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 43.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 43.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 42.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 42.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 42.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 41.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 40.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 40.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 39.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 39.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 39.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 38.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 38.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 37.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 37.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 36.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 35.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 35.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 34.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 34.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 33.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 33.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 32.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 32.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 32.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 32.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 31.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 31.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 31.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 30.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 29.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 29.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 29.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 29.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 29.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 28.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 28.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 28.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 28.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 27.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 27.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 27.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 26.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 26.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 26.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 26.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 26.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 25.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 25.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 24.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 24.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 24.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 24.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 24.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 23.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 23.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 23.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 22.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 22.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 22.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 22.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 22.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 21.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 21.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 20.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 20.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 20.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 20.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 20.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 20.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 20.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 20.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 20.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 19.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 19.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 19.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 19.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 19.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 18.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 18.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 18.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 18.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 18.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 18.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 18.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 17.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 17.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 17.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 16.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 16.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 16.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 15.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 14.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 14.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 14.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 14.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 14.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 13.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 13.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 12.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 12.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 12.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 11.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 11.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 11.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 8.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 8.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 31.3
FF:10024-101D6 15,40,85 years, mixed 31.3

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