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ABCD1
HPA
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  • ABCD1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ABCD1
Synonyms adrenoleukodystrophy, ALD, ALDP, AMN
Gene descriptioni

Full gene name according to HGNC.

ATP binding cassette subfamily D member 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Metabolic proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome X
Cytoband q28
Chromosome location (bp) 153724856 - 153744755
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000101986 (version 109)
Entrez gene 215
HGNC HGNC:61
UniProt P33897 (UniProt - Evidence at protein level)
neXtProt NX_P33897
GeneCards ABCD1
Antibodypedia ABCD1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

ATP-dependent transporter of the ATP-binding cassette (ABC) family involved in the transport of very long chain fatty acid (VLCFA)- CoA from the cytosol to the peroxisome lumen 1, 2, 3, 4, 5, 6, 7, 8. Coupled to the ATP-dependent transporter activity has also a fatty acyl-CoA thioesterase activity (ACOT) and hydrolyzes VLCFA-CoA into VLCFA prior their ATP-dependent transport into peroxisomes, the ACOT activity is essential during this transport process 9, 10. Thus, plays a role in regulation of VLCFAs and energy metabolism namely, in the degradation and biosynthesis of fatty acids by beta-oxidation, mitochondrial function and microsomal fatty acid elongation 11, 12. Involved in several processes; namely, controls the active myelination phase by negatively regulating the microsomal fatty acid elongation activity and may also play a role in axon and myelin maintenance. Controls also the cellular response to oxidative stress by regulating mitochondrial functions such as mitochondrial oxidative phosphorylation and depolarization. And finally controls the inflammatory response by positively regulating peroxisomal beta-oxidation of VLCFAs (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase, Translocase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the ALD subfamily, which is involved in peroxisomal import of fatty acids and/or fatty acyl-CoAs in the organelle. All known peroxisomal ABC transporters are half transporters which require a partner half transporter molecule to form a functional homodimeric or heterodimeric transporter. This peroxisomal membrane protein is likely involved in the peroxisomal transport or catabolism of very long chain fatty acids. Defects in this gene have been identified as the underlying cause of adrenoleukodystrophy, an X-chromosome recessively inherited demyelinating disorder of the nervous system. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ABCD1-201
ENSP00000218104
ENST00000218104
P33897
[Direct mapping] ATP-binding cassette sub-family D member 1
Show all
Metabolic proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of lipid/glycolipid metabolism
   Peroxisomal diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000038 [very long-chain fatty acid metabolic process]
GO:0000166 [nucleotide binding]
GO:0002082 [regulation of oxidative phosphorylation]
GO:0005324 [long-chain fatty acid transporter activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005777 [peroxisome]
GO:0005778 [peroxisomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0006635 [fatty acid beta-oxidation]
GO:0007031 [peroxisome organization]
GO:0015607 [ABC-type fatty-acyl-CoA transporter activity]
GO:0015910 [long-chain fatty acid import into peroxisome]
GO:0015916 [fatty-acyl-CoA transport]
GO:0015919 [peroxisomal membrane transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016787 [hydrolase activity]
GO:0016887 [ATP hydrolysis activity]
GO:0019899 [enzyme binding]
GO:0030497 [fatty acid elongation]
GO:0031966 [mitochondrial membrane]
GO:0031998 [regulation of fatty acid beta-oxidation]
GO:0032000 [positive regulation of fatty acid beta-oxidation]
GO:0036109 [alpha-linolenic acid metabolic process]
GO:0036113 [very long-chain fatty-acyl-CoA catabolic process]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0042758 [long-chain fatty acid catabolic process]
GO:0042760 [very long-chain fatty acid catabolic process]
GO:0042802 [identical protein binding]
GO:0042803 [protein homodimerization activity]
GO:0043217 [myelin maintenance]
GO:0043531 [ADP binding]
GO:0043651 [linoleic acid metabolic process]
GO:0046982 [protein heterodimerization activity]
GO:0047617 [acyl-CoA hydrolase activity]
GO:0048471 [perinuclear region of cytoplasm]
GO:0051900 [regulation of mitochondrial depolarization]
GO:0055085 [transmembrane transport]
GO:0055089 [fatty acid homeostasis]
GO:0055092 [sterol homeostasis]
GO:0140359 [ABC-type transporter activity]
GO:1900016 [negative regulation of cytokine production involved in inflammatory response]
GO:1900407 [regulation of cellular response to oxidative stress]
GO:1903427 [negative regulation of reactive oxygen species biosynthetic process]
GO:1990535 [neuron projection maintenance]
GO:2001280 [positive regulation of unsaturated fatty acid biosynthetic process]
Show all
745 aa
82.9 kDa
No 5
ABCD1-202
ENSP00000359147
ENST00000370129
A6NEP8
[Direct mapping] ATP-binding cassette sub-family D member 1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of lipid/glycolipid metabolism
   Peroxisomal diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005524 [ATP binding]
GO:0005778 [peroxisomal membrane]
GO:0006635 [fatty acid beta-oxidation]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0140359 [ABC-type transporter activity]
Show all
227 aa
24.8 kDa
No 2

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