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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Low
Inner nuclear layer: Not detected
Inner plexiform layer: Low
Limiting membrane: Not detected
Nerve fiber layer: Medium
Outer plexiform layer: Low
Photoreceptor cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:207.2 nTPM
GTEx:207.2 nTPM
FANTOM5:77.7 Scaled Tags Per Million
Pig:279.6 nTPM
Mouse:996.2 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA059546
Photoreceptor cells Medium
Limiting membrane Not detected
Outer plexiform layer Low
Inner nuclear layer Not detected
Inner plexiform layer Low
Ganglion cells Low
Nerve fiber layer Medium

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 207.2
Samples: 105

Max nTPM: 329.5
Min nTPM: 105.4
Std nTPM: 50.9
Median nTPM:
6_1 73 years, female 329.5
389_1 86 years, female 319.8
415_1 77 years, female 318.6
425_1 59 years, female 312.9
375_1 74 years, female 311.3
377_1 82 years, female 304.5
414_1 84 years, female 299.3
335_1 73 years, female 296.3
35_1 74 years, female 284.3
229_1 69 years, female 278.1
246_1 77 years, male 274.5
321_1 62 years, female 271.8
153_1 70 years, female 270.8
9_1 66 years, female 270.0
254_1 77 years, female 265.7
376_1 75 years, female 264.5
172_1 72 years, female 262.2
218_1 71 years, female 257.4
350_1 84 years, female 256.3
518_1 75 years, female 253.8
413_1 59 years, female 251.7
293_1 68 years, female 249.2
355_1 70 years, female 249.0
466_1 57 years, female 239.8
162_1 79 years, female 239.6
468_1 89 years, male 237.6
490_1 67 years, female 232.4
354_1 81 years, female 231.5
499_1 55 years, female 231.1
126_1 63 years, male 230.1
237_1 82 years, male 230.1
43_1 64 years, female 227.7
217_1 76 years, male 225.3
243_1 75 years, male 223.3
313_1 79 years, female 222.8
356_1 87 years, female 222.6
115_1 83 years, male 222.5
315_1 62 years, female 221.9
320_1 89 years, female 221.7
163_1 78 years, male 220.8
316_1 62 years, male 218.5
353_1 82 years, female 218.3
319_1 81 years, male 217.4
251_1 78 years, male 217.0
139_1 64 years, female 214.9
109_1 81 years, female 213.8
4_1 88 years, female 212.9
286_1 68 years, female 212.8
394_1 75 years, female 212.5
405_1 91 years, male 212.5
142_1 61 years, female 212.1
347_1 72 years, male 211.6
404_1 82 years, female 209.3
526_1 61 years, male 207.9
177_1 74 years, male 206.9
406_1 79 years, male 203.6
503_1 68 years, male 203.3
265_1 87 years, male 202.7
266_1 85 years, male 201.4
189_1 76 years, male 200.6
18_1 88 years, male 198.4
324_1 76 years, male 198.1
307_1 66 years, female 192.2
292_1 71 years, male 192.1
120_1 70 years, female 190.0
352_1 62 years, male 188.9
288_1 66 years, female 185.3
318_1 68 years, male 182.4
386_1 76 years, male 182.4
81_1 67 years, male 180.5
117_1 61 years, male 177.4
119_1 70 years, female 173.9
41_1 94 years, female 173.4
517_1 88 years, male 172.4
137_1 83 years, male 170.7
322_1 76 years, male 170.5
32_1 67 years, male 170.2
447_1 81 years, male 169.9
149_1 88 years, male 169.7
145_1 84 years, male 169.0
99_1 64 years, male 167.7
349_1 83 years, male 166.9
311_1 78 years, male 165.6
17_1 71 years, male 165.4
264_1 73 years, female 161.7
495_1 57 years, female 161.7
291_1 76 years, male 161.6
480_1 63 years, male 160.4
2_1 77 years, female 159.8
384_1 83 years, male 157.4
396_1 62 years, male 155.0
379_1 60 years, male 152.2
89_1 63 years, male 146.2
295_1 61 years, female 144.8
491_1 89 years, female 143.8
351_1 91 years, male 141.9
452_1 88 years, female 138.2
348_1 84 years, male 133.3
173_1 67 years, male 128.3
42_1 85 years, male 125.9
317_1 60 years, male 117.8
314_1 67 years, male 115.1
308_1 70 years, female 114.0
501_1 88 years, male 112.4
506_1 65 years, male 105.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

77.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 77.7
FF:10030-101E3 24-65 years, mixed 77.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

279.6
Pig sample Sample description nTPM
Retina
nTPM: 279.6
Samples: 4

Max nTPM: 318.8
Min nTPM: 258.3
Sample A Female 279.8
Sample B Female 318.8
Sample C Male 258.3
Sample D Male 261.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

996.2
Mouse sample Sample description nTPM
Retina
nTPM: 996.2
Samples: 4

Max nTPM: 1142.8
Min nTPM: 849.3
Sample A Male 1141.0
Sample B Male 851.6
Sample C Female 849.3
Sample D Female 1142.8

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