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PCSK1N
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  • PCSK1N
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Neuronal projections: High
Synapses: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:539.2 nTPM
FANTOM5:693.4 Scaled Tags Per Million
Pig:797.5 nTPM

CAUDATE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA003925
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses Medium

CAUDATE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA064734
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses Medium

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003925Antibody HPA064734
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

539.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 539.2
Samples: 246

Max nTPM: 1370.9
Min nTPM: 94.5
Std nTPM: 244.3
Median nTPM: 498.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1370.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1345.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1335.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1296.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1265.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1254.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1089.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1058.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1026.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1021.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1015.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 999.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 993.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 991.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 975.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 947.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 938.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 936.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 904.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 894.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 890.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 881.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 877.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 854.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 850.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 846.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 845.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 841.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 840.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 836.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 835.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 826.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 814.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 812.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 801.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 800.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 796.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 788.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 782.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 772.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 768.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 768.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 767.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 762.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 744.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 738.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 726.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 725.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 722.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 721.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 718.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 710.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 709.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 708.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 708.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 703.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 693.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 692.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 688.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 687.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 680.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 674.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 672.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 672.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 670.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 663.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 658.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 655.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 654.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 653.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 646.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 645.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 641.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 641.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 638.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 631.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 629.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 619.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 612.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 612.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 609.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 605.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 603.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 600.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 597.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 596.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 594.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 586.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 584.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 579.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 578.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 575.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 569.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 568.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 566.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 564.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 562.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 558.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 556.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 552.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 551.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 550.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 548.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 546.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 546.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 545.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 539.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 538.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 538.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 535.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 533.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 533.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 529.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 517.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 509.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 507.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 505.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 505.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 505.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 504.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 503.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 501.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 499.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 498.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 498.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 496.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 494.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 490.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 490.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 489.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 489.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 489.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 488.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 488.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 483.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 480.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 477.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 477.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 476.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 474.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 471.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 465.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 465.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 465.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 460.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 459.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 458.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 455.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 455.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 453.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 446.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 445.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 444.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 442.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 441.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 432.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 425.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 423.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 419.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 418.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 413.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 412.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 409.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 400.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 396.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 396.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 395.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 394.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 387.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 387.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 383.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 382.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 381.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 381.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 380.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 379.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 379.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 375.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 375.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 374.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 373.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 372.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 371.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 369.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 363.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 363.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 360.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 360.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 358.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 357.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 354.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 350.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 349.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 347.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 347.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 345.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 341.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 340.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 334.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 334.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 333.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 333.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 325.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 317.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 304.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 300.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 299.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 299.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 299.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 287.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 286.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 286.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 284.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 283.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 281.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 276.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 274.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 271.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 267.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 261.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 260.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 255.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 251.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 247.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 245.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 243.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 238.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 236.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 234.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 233.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 225.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 225.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 224.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 215.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 210.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 203.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 200.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 194.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 182.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 158.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 155.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 155.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 134.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 126.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 111.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 94.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

693.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 693.4
FF:10164-103B2 76 years, female 693.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

797.5
Pig sample Sample description nTPM
Caudate
nTPM: 797.5
Samples: 4

Max nTPM: 985.7
Min nTPM: 595.9
Sample A Female 595.9
Sample B Female 985.7
Sample C Male 963.1
Sample D Male 645.1

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