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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:87.1 nTPM
HPA Brain:164.3 nTPM
GTEx:87.1 nTPM
FANTOM5:209.7 Scaled Tags Per Million
Pig:39.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 152.6
2194 Female, age 79, both hemispheres 188.4
2565 Male, age 75, midline 160.4
1981 Female, age 72, midline 149.0
2816 Male, age 47, midline 137.3
2048 Male, age 55, midline 127.7
Cervical spinal cord, dorsal horn
nTPM: 153.3
2296 Male, age 66, both hemispheres 174.1
2173 Female, age 72, unknown 163.8
2069 Male, age 47, both hemispheres 156.7
2297 Male, age 75, both hemispheres 149.5
1877 Male, age 55, unknown 146.5
2721 Male, age 90, both hemispheres 129.1
Cervical spinal cord, ventral horn
nTPM: 164.3
2820 Female, age 79, both hemispheres 191.3
2480 Male, age 75, both hemispheres 188.9
2068 Male, age 55, unknown 177.4
2809 Male, age 90, both hemispheres 153.4
2295 Male, age 66, both hemispheres 149.4
2098 Female, age 72, unknown 125.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 87.1
Samples: 159

Max nTPM: 152.4
Min nTPM: 45.8
Std nTPM: 21.0
Median nTPM: 85.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 152.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 139.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 136.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 134.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 128.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 128.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 127.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 126.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 126.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 124.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 123.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 122.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 121.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 117.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 117.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 115.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 115.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 114.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 111.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 111.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 111.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 110.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 109.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 108.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 107.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 106.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 106.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 106.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 105.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 105.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 103.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 102.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 102.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 102.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 101.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 100.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 100.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 100.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 99.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 99.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 99.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 99.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 99.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 98.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 98.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 98.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 97.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 97.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 97.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 97.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 97.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 96.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 96.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 95.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 95.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 95.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 94.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 94.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 93.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 92.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 92.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 91.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 91.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 90.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 90.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 90.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 89.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 89.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 89.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 88.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 88.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 88.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 88.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 88.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 88.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 88.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 87.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 86.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 86.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 85.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 85.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 84.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 84.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 84.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 83.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 83.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 83.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 82.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 82.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 82.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 81.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 81.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 81.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 80.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 80.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 79.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 79.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 79.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 79.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 79.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 78.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 77.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 77.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 77.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 76.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 76.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 76.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 76.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 75.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 75.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 75.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 74.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 74.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 73.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 73.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 72.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 72.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 72.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 72.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 72.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 71.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 71.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 71.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 70.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 70.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 70.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 70.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 69.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 69.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 69.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 69.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 68.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 67.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 67.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 65.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 65.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 64.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 64.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 63.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 63.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 62.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 61.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 61.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 60.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 60.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 59.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 58.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 57.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 56.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 52.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 52.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 51.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 51.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 50.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 50.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 49.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 48.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 46.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 45.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

209.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 209.7
FF:10181-103D1 60 years, female 314.7
FF:10159-103A6 76 years, female 104.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 39.3
Samples: 4

Max nTPM: 46.4
Min nTPM: 31.9
Sample A Female 46.4
Sample B Female 31.9
Sample C Male 39.1
Sample D Male 39.6
Ventral spinal cord
nTPM: 37.2
Samples: 4

Max nTPM: 41.1
Min nTPM: 30.9
Sample A Female 37.7
Sample B Female 39.1
Sample C Male 41.1
Sample D Male 30.9

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