HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA Brain:57.9 nTPM
GTEx:37.1 nTPM
FANTOM5:158.6 Scaled Tags Per Million
Pig:26.0 nTPM
Mouse:80.3 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000325Antibody HPA000967
Glial cells Not detectedNot detected
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 57.9
Sample id Sample description nTPM
Hippocampus
nTPM: 50.7
1898 Male, age 80, left hemisphere 67.6
2621 Female, age 67, right hemisphere 53.2
2529 Female, age 94, left hemisphere 47.9
2148 Female, age 91, left hemisphere 47.4
1855 Male, age 76, left hemisphere 45.6
1911 Female, age 85, right hemisphere 42.8
Dentate gyrus
nTPM: 49.3
2010 Male, age 76, both hemispheres 60.5
1927 Female, age 91, both hemispheres 53.9
2530 Female, age 94, left hemisphere 50.3
2528 Male, age 74, both hemispheres 49.3
2246 Female, age 85, both hemispheres 43.1
2531 Female, age 67, both hemispheres 38.9
Entorhinal gyrus
nTPM: 47.2
2117 Female, age 91, right hemisphere 52.4
1938 Female, age 85, left hemisphere 50.0
2764 Male, age 80, right hemisphere 48.7
2686 Male, age 75, right hemisphere 47.1
1787 Male, age 76, left hemisphere 44.7
2613 Female, age 94, left hemisphere 40.5
Hippocampus, CA1
nTPM: 57.9
2749 Male, age 80, left hemisphere 88.9
1873 Female, age 85, both hemispheres 59.2
2527 Male, age 74, both hemispheres 52.1
2045 Male, age 76, both hemispheres 46.7
2082 Female, age 91, right hemisphere 42.4
Hippocampus, CA2
nTPM: 52.7
1892 Male, age 76, both hemispheres 65.1
1963 Male, age 80, left hemisphere 64.7
2249 Male, age 74, both hemispheres 50.2
1940 Female, age 85, left hemisphere 46.2
2437 Female, age 94, left hemisphere 45.7
2113 Female, age 91, right hemisphere 44.0
Hippocampus, CA3
nTPM: 51.5
2137 Male, age 80, left hemisphere 71.0
1867 Male, age 76, both hemispheres 63.9
1891 Female, age 85, both hemispheres 49.3
2436 Male, age 74, both hemispheres 45.9
2620 Female, age 94, left hemisphere 41.3
2861 Female, age 67, both hemispheres 37.8
Parahippocampal cortex
nTPM: 46.3
1850 Male, age 80, both hemispheres 57.1
1990 Female, age 91, right hemisphere 52.0
2018 Male, age 76, both hemispheres 49.0
2245 Female, age 91, both hemispheres 49.0
2532 Female, age 72, left hemisphere 45.4
2250 Female, age 67, right hemisphere 45.1
1933 Female, age 85, both hemispheres 45.0
2693 Female, age 94, both hemispheres 41.8
2692 Male, age 74, both hemispheres 41.6
2622 Female, age 67, right hemisphere 36.6
Perirhinal gyrus
nTPM: 48.9
1847 Female, age 91, left hemisphere 55.0
1794 Male, age 80, right hemisphere 54.2
1841 Female, age 85, right hemisphere 50.6
2848 Male, age 76, right hemisphere 42.5
2521 Female, age 94, right hemisphere 42.4
Subiculum
nTPM: 49.4
1901 Male, age 80, both hemispheres 60.2
2042 Male, age 76, both hemispheres 51.4
2619 Male, age 74, both hemispheres 50.6
1977 Female, age 85, both hemispheres 48.4
2438 Female, age 94, left hemisphere 43.2
2729 Female, age 91, right hemisphere 42.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 37.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.1
Samples: 197

Max nTPM: 62.4
Min nTPM: 22.9
Std nTPM: 7.0
Median nTPM: 35.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 62.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 56.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 55.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 55.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 55.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 53.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 52.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 52.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 51.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 51.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 50.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 158.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 158.6
FF:10169-103B7 60 years, female 206.6
FF:10153-102I9 76 years, female 110.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 26.0
Pig sample Sample description nTPM
Subiculum
nTPM: 24.5
Samples: 4

Max nTPM: 30.1
Min nTPM: 22.4
Sample A Female 30.1
Sample B Female 23.0
Sample C Male 22.6
Sample D Male 22.4
Dorsal hippocampus
nTPM: 26.0
Samples: 4

Max nTPM: 31.9
Min nTPM: 22.1
Sample A Female 31.9
Sample B Female 25.4
Sample C Male 24.7
Sample D Male 22.1
Entorhinal cortex
nTPM: 22.6
Samples: 4

Max nTPM: 25.2
Min nTPM: 20.3
Sample A Female 23.3
Sample B Female 25.2
Sample C Male 21.6
Sample D Male 20.3
Ventral hippocampus
nTPM: 23.8
Samples: 4

Max nTPM: 27.7
Min nTPM: 20.4
Sample A Female 24.4
Sample B Female 20.4
Sample C Male 22.5
Sample D Male 27.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 80.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 64.3
Samples: 4

Max nTPM: 67.8
Min nTPM: 60.8
Sample A Male 60.8
Sample B Male 65.5
Sample C Female 67.8
Sample D Female 62.9
Hippocampal formation
nTPM: 80.3
Samples: 4

Max nTPM: 86.4
Min nTPM: 74.7
Sample A Male 78.1
Sample B Male 82.1
Sample C Female 86.4
Sample D Female 74.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
564641 Antisense, RP_040826_01_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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