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RUBCNL
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • STRUCT & INT

  • RUBCNL
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RUBCNL
Synonyms C13orf18, FLJ21562, KIAA0226L, PACER
Gene descriptioni

Full gene name according to HGNC.

Rubicon like autophagy enhancer
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 13
Cytoband q14.13
Chromosome location (bp) 46334681 - 46438190
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

15
Ensembl ENSG00000102445 (version 109)
Entrez gene 80183
HGNC HGNC:20420
UniProt Q9H714 (UniProt - Evidence at protein level)
neXtProt NX_Q9H714
GeneCards RUBCNL
Antibodypedia RUBCNL antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Regulator of autophagy that promotes autophagosome maturation by facilitating the biogenesis of phosphatidylinositol 3-phosphate (PtdIns(3)P) in late steps of autophagy 1, 2. Acts by antagonizing RUBCN, thereby stimulating phosphatidylinositol 3-kinase activity of the PI3K/PI3KC3 complex 3. Following anchorage to the autophagosomal SNARE STX17, promotes the recruitment of PI3K/PI3KC3 and HOPS complexes to the autophagosome to regulate the fusion specificity of autophagosomes with late endosomes/lysosomes 4. Binds phosphoinositides phosphatidylinositol 3-phosphate (PtdIns(3)P), 4-phosphate (PtdIns(4)P) and 5-phosphate (PtdIns(5)P) 5. In addition to its role in autophagy, acts as a regulator of lipid and glycogen homeostasis (By similarity). May act as a tumor suppressor (Probable).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Autophagy, Lipid metabolism
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Lipid-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a cysteine-rich protein that contains a putative zinc-RING and/or ribbon domain. The encoded protein is related to Run domain Beclin-1-interacting and cysteine-rich domain-containing protein, which plays a role in endocytic trafficking and autophagy. In cervical cancer cell lines, this gene is expressed at low levels and may function as a tumor suppressor. Promoter hypermethylation of this gene is observed in cervical cancer cell lines and tissue derived from human patients. [provided by RefSeq, Mar 2017]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RUBCNL-201
ENSP00000368057
ENST00000378781
B7ZBN5
[Direct mapping] Protein-associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
505 aa
57.1 kDa
No 0
RUBCNL-202
ENSP00000368061
ENST00000378784
Q9H714
[Direct mapping] Protein associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000421 [autophagosome membrane]
GO:0005515 [protein binding]
GO:0006629 [lipid metabolic process]
GO:0006914 [autophagy]
GO:0008289 [lipid binding]
GO:0010314 [phosphatidylinositol-5-phosphate binding]
GO:0016020 [membrane]
GO:0019216 [regulation of lipid metabolic process]
GO:0031410 [cytoplasmic vesicle]
GO:0032266 [phosphatidylinositol-3-phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0061909 [autophagosome-lysosome fusion]
GO:0061910 [autophagosome-endosome fusion]
GO:0070273 [phosphatidylinositol-4-phosphate binding]
GO:0070873 [regulation of glycogen metabolic process]
GO:0097352 [autophagosome maturation]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
595 aa
66.3 kDa
No 0
RUBCNL-203
ENSP00000368064
ENST00000378787
Q9H714
[Direct mapping] Protein associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000421 [autophagosome membrane]
GO:0005515 [protein binding]
GO:0006629 [lipid metabolic process]
GO:0006914 [autophagy]
GO:0008289 [lipid binding]
GO:0010314 [phosphatidylinositol-5-phosphate binding]
GO:0016020 [membrane]
GO:0019216 [regulation of lipid metabolic process]
GO:0031410 [cytoplasmic vesicle]
GO:0032266 [phosphatidylinositol-3-phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0061909 [autophagosome-lysosome fusion]
GO:0061910 [autophagosome-endosome fusion]
GO:0070273 [phosphatidylinositol-4-phosphate binding]
GO:0070873 [regulation of glycogen metabolic process]
GO:0097352 [autophagosome maturation]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
635 aa
70.8 kDa
No 0
RUBCNL-204
ENSP00000368074
ENST00000378797
A0A0A0MRV7
[Direct mapping] Protein-associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
447 aa
50.5 kDa
No 0
RUBCNL-205
ENSP00000374558
ENST00000389908
Q9H714
[Direct mapping] Protein associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000421 [autophagosome membrane]
GO:0005515 [protein binding]
GO:0006629 [lipid metabolic process]
GO:0006914 [autophagy]
GO:0008289 [lipid binding]
GO:0010314 [phosphatidylinositol-5-phosphate binding]
GO:0016020 [membrane]
GO:0019216 [regulation of lipid metabolic process]
GO:0031410 [cytoplasmic vesicle]
GO:0032266 [phosphatidylinositol-3-phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0061909 [autophagosome-lysosome fusion]
GO:0061910 [autophagosome-endosome fusion]
GO:0070273 [phosphatidylinositol-4-phosphate binding]
GO:0070873 [regulation of glycogen metabolic process]
GO:0097352 [autophagosome maturation]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
662 aa
73.5 kDa
No 0
RUBCNL-206
ENSP00000386578
ENST00000409879
B7ZBN5
[Direct mapping] Protein-associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
505 aa
57.1 kDa
No 0
RUBCNL-207
ENSP00000402357
ENST00000417405
Q9H714
[Direct mapping] Protein associated with UVRAG as autophagy enhancer
Show all
Q5W050
[Direct mapping] Protein-associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000421 [autophagosome membrane]
GO:0005515 [protein binding]
GO:0006629 [lipid metabolic process]
GO:0006914 [autophagy]
GO:0008289 [lipid binding]
GO:0010314 [phosphatidylinositol-5-phosphate binding]
GO:0016020 [membrane]
GO:0019216 [regulation of lipid metabolic process]
GO:0031410 [cytoplasmic vesicle]
GO:0032266 [phosphatidylinositol-3-phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0061909 [autophagosome-lysosome fusion]
GO:0061910 [autophagosome-endosome fusion]
GO:0070273 [phosphatidylinositol-4-phosphate binding]
GO:0070873 [regulation of glycogen metabolic process]
GO:0097352 [autophagosome maturation]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
635 aa
70.8 kDa
No 0
RUBCNL-208
ENSP00000396935
ENST00000429979
Q9H714
[Direct mapping] Protein associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000421 [autophagosome membrane]
GO:0005515 [protein binding]
GO:0006629 [lipid metabolic process]
GO:0006914 [autophagy]
GO:0008289 [lipid binding]
GO:0010314 [phosphatidylinositol-5-phosphate binding]
GO:0016020 [membrane]
GO:0019216 [regulation of lipid metabolic process]
GO:0031410 [cytoplasmic vesicle]
GO:0032266 [phosphatidylinositol-3-phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0061909 [autophagosome-lysosome fusion]
GO:0061910 [autophagosome-endosome fusion]
GO:0070273 [phosphatidylinositol-4-phosphate binding]
GO:0070873 [regulation of glycogen metabolic process]
GO:0097352 [autophagosome maturation]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
662 aa
73.5 kDa
No 0
RUBCNL-209
ENSP00000414579
ENST00000439642
A8XR14
[Direct mapping] Protein-associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
178 aa
18.9 kDa
No 0
RUBCNL-212
ENSP00000485932
ENST00000631139
Q9H714
[Direct mapping] Protein associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000421 [autophagosome membrane]
GO:0005515 [protein binding]
GO:0006629 [lipid metabolic process]
GO:0006914 [autophagy]
GO:0008289 [lipid binding]
GO:0010314 [phosphatidylinositol-5-phosphate binding]
GO:0016020 [membrane]
GO:0019216 [regulation of lipid metabolic process]
GO:0031410 [cytoplasmic vesicle]
GO:0032266 [phosphatidylinositol-3-phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0061909 [autophagosome-lysosome fusion]
GO:0061910 [autophagosome-endosome fusion]
GO:0070273 [phosphatidylinositol-4-phosphate binding]
GO:0070873 [regulation of glycogen metabolic process]
GO:0097352 [autophagosome maturation]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
527 aa
59.2 kDa
No 0
RUBCNL-215
ENSP00000502011
ENST00000675585
A0A6Q8PFX0
[Direct mapping] Protein-associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
571 aa
63.4 kDa
No 0
RUBCNL-217
ENSP00000502396
ENST00000675992
A0A0A0MRV7
[Direct mapping] Protein-associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
447 aa
50.5 kDa
No 0
RUBCNL-218
ENSP00000501843
ENST00000676051
Q9H714
[Direct mapping] Protein associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000421 [autophagosome membrane]
GO:0005515 [protein binding]
GO:0006629 [lipid metabolic process]
GO:0006914 [autophagy]
GO:0008289 [lipid binding]
GO:0010314 [phosphatidylinositol-5-phosphate binding]
GO:0016020 [membrane]
GO:0019216 [regulation of lipid metabolic process]
GO:0031410 [cytoplasmic vesicle]
GO:0032266 [phosphatidylinositol-3-phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0061909 [autophagosome-lysosome fusion]
GO:0061910 [autophagosome-endosome fusion]
GO:0070273 [phosphatidylinositol-4-phosphate binding]
GO:0070873 [regulation of glycogen metabolic process]
GO:0097352 [autophagosome maturation]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
527 aa
59.2 kDa
No 0
RUBCNL-221
ENSP00000502252
ENST00000676114
Q9H714
[Direct mapping] Protein associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000421 [autophagosome membrane]
GO:0005515 [protein binding]
GO:0006629 [lipid metabolic process]
GO:0006914 [autophagy]
GO:0008289 [lipid binding]
GO:0010314 [phosphatidylinositol-5-phosphate binding]
GO:0016020 [membrane]
GO:0019216 [regulation of lipid metabolic process]
GO:0031410 [cytoplasmic vesicle]
GO:0032266 [phosphatidylinositol-3-phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0061909 [autophagosome-lysosome fusion]
GO:0061910 [autophagosome-endosome fusion]
GO:0070273 [phosphatidylinositol-4-phosphate binding]
GO:0070873 [regulation of glycogen metabolic process]
GO:0097352 [autophagosome maturation]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
662 aa
73.5 kDa
No 0
RUBCNL-222
ENSP00000502015
ENST00000676307
Q9H714
[Direct mapping] Protein associated with UVRAG as autophagy enhancer
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000421 [autophagosome membrane]
GO:0005515 [protein binding]
GO:0006629 [lipid metabolic process]
GO:0006914 [autophagy]
GO:0008289 [lipid binding]
GO:0010314 [phosphatidylinositol-5-phosphate binding]
GO:0016020 [membrane]
GO:0019216 [regulation of lipid metabolic process]
GO:0031410 [cytoplasmic vesicle]
GO:0032266 [phosphatidylinositol-3-phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0061909 [autophagosome-lysosome fusion]
GO:0061910 [autophagosome-endosome fusion]
GO:0070273 [phosphatidylinositol-4-phosphate binding]
GO:0070873 [regulation of glycogen metabolic process]
GO:0097352 [autophagosome maturation]
GO:1901981 [phosphatidylinositol phosphate binding]
Show all
662 aa
73.5 kDa
No 0

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