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FNDC3A
HPA
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  • FNDC3A
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

FNDC3A
Synonyms bA203I16.5, FNDC3, KIAA0970
Gene descriptioni

Full gene name according to HGNC.

Fibronectin type III domain containing 3A
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 13
Cytoband q14.2
Chromosome location (bp) 48975912 - 49209779
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000102531 (version 109)
Entrez gene 22862
HGNC HGNC:20296
UniProt Q9Y2H6 (UniProt - Evidence at protein level)
neXtProt NX_Q9Y2H6
GeneCards FNDC3A
Antibodypedia FNDC3A antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates spermatid-Sertoli adhesion during spermatogenesis.... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables RNA binding activity. Predicted to act upstream of or within several processes, including Sertoli cell development; fertilization; and spermatid development. Located in Golgi apparatus. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
FNDC3A-201
ENSP00000484320
ENST00000378383
A0A087X1M6
[Direct mapping] Fibronectin type-III domain-containing protein 3A
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
326 aa
35.3 kDa
No 0
FNDC3A-202
ENSP00000381362
ENST00000398316
Q9Y2H6
[Direct mapping] Fibronectin type-III domain-containing protein 3A
Show all
A0A024RDV5
[Target identity:100%; Query identity:100%] Fibronectin type III domain containing 3A, isoform CRA_b
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0007286 [spermatid development]
GO:0016020 [membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
1142 aa
125.8 kDa
No 1
FNDC3A-204
ENSP00000417257
ENST00000492622
Q9Y2H6
[Direct mapping] Fibronectin type-III domain-containing protein 3A
Show all
A0A024RDT9
[Target identity:100%; Query identity:100%] Fibronectin type III domain containing 3A, isoform CRA_d
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0001669 [acrosomal vesicle]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0007286 [spermatid development]
GO:0009566 [fertilization]
GO:0012506 [vesicle membrane]
GO:0016020 [membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0060009 [Sertoli cell development]
GO:0098609 [cell-cell adhesion]
Show all
1198 aa
131.9 kDa
No 1
FNDC3A-206
ENSP00000441831
ENST00000541916
Q9Y2H6
[Direct mapping] Fibronectin type-III domain-containing protein 3A
Show all
A0A024RDT9
[Target identity:100%; Query identity:100%] Fibronectin type III domain containing 3A, isoform CRA_d
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0007286 [spermatid development]
GO:0016020 [membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
1198 aa
131.9 kDa
No 1

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