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  • TSC22D1
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:208.8 nTPM
FANTOM5:446.3 Scaled Tags Per Million
Allen mouse:4.8 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.8
Sample id Sample description nTPM
Area postrema
nTPM: 166.0
2054 Male, age 76, both hemispheres 255.3
2799 Male, age 61, both hemispheres 131.2
2306 Male, age 80, both hemispheres 111.6
Dorsal medullary reticular nucleus
nTPM: 163.8
2088 Male, age 76, both hemispheres 171.5
2040 Female, age 85, both hemispheres 170.8
2373 Male, age 61, both hemispheres 149.2
Dorsal motor vagal complex
nTPM: 160.9
2797 Male, age 61, both hemispheres 186.6
2185 Male, age 76, both hemispheres 182.6
2844 Male, age 55, unknown 179.0
2133 Female, age 91, both hemispheres 178.8
2000 Male, age 74, unknown 148.6
2643 Male, age 74, both hemispheres 148.1
2813 Female, age 72, unknown 143.3
2807 Female, age 85, both hemispheres 120.1
Gigantocellular reticular nuclei, medullary
nTPM: 168.6
2462 Male, age 74, both hemispheres 194.1
2387 Female, age 91, both hemispheres 188.7
2310 Male, age 80, both hemispheres 162.2
2022 Male, age 76, right hemisphere 159.6
2314 Male, age 61, both hemispheres 158.6
1876 Female, age 85, both hemispheres 148.3
Gigantocellular reticular nuclei, pars
nTPM: 147.4
2336 Male, age 61, both hemispheres 163.5
2084 Female, age 85, both hemispheres 154.9
2706 Male, age 80, both hemispheres 150.4
2330 Male, age 80, both hemispheres 148.9
2168 Male, age 76, both hemispheres 119.3
Inferior olive
nTPM: 173.7
2085 Female, age 85, both hemispheres 206.7
2563 Male, age 74, both hemispheres 183.2
2379 Male, age 80, both hemispheres 165.4
2178 Male, age 61, both hemispheres 165.0
2628 Female, age 91, both hemispheres 148.2
Lateral medullary reticular nucleus
nTPM: 155.7
2044 Male, age 76, both hemispheres 218.5
2804 Female, age 91, both hemispheres 160.7
2190 Female, age 85, both hemispheres 158.5
2374 Male, age 61, both hemispheres 149.0
2852 Male, age 80, both hemispheres 126.9
2305 Male, age 74, both hemispheres 120.7
Medial olivary nucleus
nTPM: 150.3
1962 Male, age 76, both hemispheres 215.4
2138 Female, age 91, both hemispheres 157.1
2851 Male, age 80, both hemispheres 118.2
1943 Male, age 61, both hemispheres 110.4
Medial vestibular nucleus
nTPM: 173.1
2134 Male, age 76, both hemispheres 271.3
2093 Male, age 80, both hemispheres 160.5
2803 Female, age 91, both hemispheres 159.0
2743 Female, age 85, both hemispheres 152.1
2801 Male, age 74, both hemispheres 151.8
2624 Male, age 61, both hemispheres 144.1
Motor hypoglossal nucleus
nTPM: 175.7
2277 Male, age 76, both hemispheres 270.6
2125 Female, age 91, both hemispheres 171.2
2132 Female, age 85, both hemispheres 156.3
2461 Male, age 61, both hemispheres 148.5
2182 Male, age 80, both hemispheres 132.0
Nucleus ambiguus
nTPM: 208.8
2071 Male, age 76, both hemispheres 257.0
2096 Female, age 85, both hemispheres 160.6
Nucleus cuneatus
nTPM: 155.5
2562 Male, age 61, both hemispheres 208.9
2564 Male, age 74, both hemispheres 177.7
2376 Male, age 61, both hemispheres 173.7
2131 Male, age 76, both hemispheres 153.7
2805 Female, age 91, both hemispheres 152.6
2100 Male, age 76, both hemispheres 145.7
2381 Male, age 80, both hemispheres 137.7
2808 Female, age 85, both hemispheres 126.7
2380 Male, age 80, both hemispheres 123.1
Nucleus gracilis
nTPM: 115.1
2382 Male, age 80, both hemispheres 118.0
2299 Female, age 85, both hemispheres 116.0
2627 Male, age 74, both hemispheres 111.3
Nucleus raphe obscurus
nTPM: 175.7
2142 Male, age 76, midline 225.6
2800 Male, age 61, midline 157.1
2845 Female, age 85, midline 144.3
Nucleus raphe pallidus
nTPM: 155.1
2145 Male, age 76, midline 205.9
2183 Male, age 80, midline 157.8
1924 Male, age 61, midline 101.5
Nucleus tractus solitarii
nTPM: 173.9
2656 Male, age 76, both hemispheres 255.3
2144 Female, age 91, right hemisphere 167.8
2191 Female, age 85, both hemispheres 140.1
2307 Male, age 80, both hemispheres 132.2
Parvicellular reticular nuclei
nTPM: 175.2
2558 Male, age 74, both hemispheres 191.9
2095 Male, age 76, both hemispheres 169.3
2119 Male, age 80, both hemispheres 164.5
Parvicellular reticular nuclei, medullary
nTPM: 159.7
2189 Female, age 91, both hemispheres 163.7
2181 Male, age 80, left hemisphere 159.9
2091 Female, age 85, both hemispheres 155.6
Peritrigeminal nucleus
nTPM: 175.7
2136 Male, age 76, both hemispheres 235.0
2179 Male, age 61, both hemispheres 148.7
2067 Female, age 85, both hemispheres 143.3
Prepositus hypoglossal nucleus
nTPM: 153.4
2855 Female, age 85, right hemisphere 156.9
2086 Male, age 80, both hemispheres 149.9
Spinal trigeminal nucleus, caudal
nTPM: 158.6
2447 Male, age 76, both hemispheres 180.5
2390 Female, age 91, both hemispheres 170.1
2312 Male, age 61, both hemispheres 149.1
2642 Male, age 74, both hemispheres 146.7
2308 Male, age 80, both hemispheres 146.4
Spinal trigeminal nucleus, interpolar
nTPM: 184.2
2066 Male, age 76, right hemisphere 232.8
2625 Male, age 61, both hemispheres 209.3
2033 Male, age 80, both hemispheres 176.6
2386 Female, age 85, both hemispheres 159.1
2389 Female, age 91, both hemispheres 143.3
Spinal vestibular nucleus
nTPM: 173.0
2748 Male, age 76, both hemispheres 232.4
2796 Male, age 61, both hemispheres 179.1
2780 Male, age 80, both hemispheres 165.5
2384 Male, age 74, both hemispheres 165.4
2186 Female, age 91, both hemispheres 155.9
2806 Female, age 85, both hemispheres 139.8
Superior vestibular nucleus
nTPM: 187.7
2061 Male, age 76, both hemispheres 273.8
2383 Male, age 74, both hemispheres 146.4
2015 Male, age 80, both hemispheres 143.0
Ventral medullary reticular nucleus
nTPM: 169.9
2060 Male, age 76, both hemispheres 179.0
2372 Male, age 61, both hemispheres 160.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 173.5
1986 Male, age 76, both hemispheres 229.7
2180 Male, age 61, both hemispheres 168.6
2741 Female, age 85, both hemispheres 164.9
2302 Female, age 91, both hemispheres 157.8
2118 Male, age 80, both hemispheres 146.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

446.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 446.3
FF:10174-103C3 60 years, female 564.7
FF:10038-101F2 18-64 years, mixed 412.2
FF:10155-103A2 76 years, female 362.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.8
1052 Antisense, RP_Baylor_103071, Mouse strain C57BL/6J (56 days, male) 9.5
1051 Antisense, RP_Baylor_103071, Mouse strain C57BL/6J (56 days, male) 9.1
1053 Sense, RPS_Baylor_37057, Mouse strain C57BL/6J (56 days, male) 0.0

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