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OLFM4
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1259.1 nTPM
HPA:1259.1 nTPM
GTEx:907.7 nTPM
FANTOM5:2243.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA077718
Endocrine cells Not detected
Enterocytes Not detected
Enterocytes - Microvilli Not detected
Goblet cells High
Paneth cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1259.1
overview
Male, age 65
Small intestine sample 232
nTPM: 953.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 655.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1971
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1456.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

907.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 907.7
Samples: 187

Max nTPM: 4655.9
Min nTPM: 0.2
Std nTPM: 1054.5
Median nTPM: 540.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 4655.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 4545.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 4129.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 3880.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 3817.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3802.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 3738.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3656.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 3632.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 3368.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3279.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 3089.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 3014.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2940.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2832.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2751.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2594.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2566.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2551.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2475.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 2466.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2403.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2316.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2093.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2091.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2038.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1997.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1951.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1915.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1914.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1909.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1851.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1801.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1799.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 1792.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1744.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1682.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1682.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1607.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1560.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1504.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1499.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1473.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1443.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1378.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1351.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1347.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1181.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1176.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1138.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1137.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1135.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1096.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1038.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1025.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1019.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 947.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 940.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 923.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 901.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 891.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 874.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 860.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 853.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 835.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 833.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 799.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 797.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 788.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 781.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 761.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 748.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 738.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 733.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 696.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 689.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 686.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 677.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 672.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 671.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 659.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 625.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 612.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 609.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 603.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 587.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 587.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 585.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 584.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 577.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 576.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 550.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 541.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 540.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 539.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 528.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 492.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 486.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 484.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 474.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 472.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 466.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 465.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 446.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 436.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 432.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 429.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 425.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 422.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 417.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 398.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 379.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 378.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 377.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 374.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 352.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 314.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 306.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 298.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 297.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 292.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 285.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 281.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 280.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 275.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 269.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 262.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 245.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 244.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 203.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 188.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 188.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 184.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 177.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 176.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 174.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 140.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 126.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 124.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 123.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 109.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 105.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 99.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 96.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 96.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 86.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 82.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 77.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 70.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 66.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 64.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 39.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 38.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 38.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 32.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 28.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 28.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 27.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 24.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 21.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 17.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 16.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 12.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 11.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 8.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 7.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 7.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 7.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 7.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 6.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 6.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 6.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 4.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 3.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 3.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2.9
GTEX-1192X-2526-SM-59868 50-59 years, male 2.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 0.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2243.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2243.0
FF:10024-101D6 15,40,85 years, mixed 2243.0

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