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NUP93
HPA
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  • NUP93
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

NUP93
Synonyms KIAA0095
Gene descriptioni

Full gene name according to HGNC.

Nucleoporin 93
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Disease related genes
Human disease related genes
Metabolic proteins
Plasma proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband q13
Chromosome location (bp) 56730118 - 56850286
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

16
Ensembl ENSG00000102900 (version 109)
Entrez gene 9688
HGNC HGNC:28958
UniProt Q8N1F7 (UniProt - Evidence at protein level)
neXtProt NX_Q8N1F7
GeneCards NUP93
Antibodypedia NUP93 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance 1. May anchor nucleoporins, but not NUP153 and TPR, to the NPC. During renal development, regulates podocyte migration and proliferation through SMAD4 signaling 2.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

mRNA transport, Protein transport, Translocation, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

The nuclear pore complex is a massive structure that extends across the nuclear envelope, forming a gateway that regulates the flow of macromolecules between the nucleus and the cytoplasm. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells. This gene encodes a nucleoporin protein that localizes both to the basket of the pore and to the nuclear entry of the central gated channel of the pore. The encoded protein is a target of caspase cysteine proteases that play a central role in programmed cell death by apoptosis. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
NUP93-201
ENSP00000310668
ENST00000308159
Q8N1F7
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0005813 [centrosome]
GO:0005829 [cytosol]
GO:0006606 [protein import into nucleus]
GO:0006913 [nucleocytoplasmic transport]
GO:0006998 [nuclear envelope organization]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016973 [poly(A)+ mRNA export from nucleus]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0034399 [nuclear periphery]
GO:0051028 [mRNA transport]
GO:0051292 [nuclear pore complex assembly]
GO:0060391 [positive regulation of SMAD protein signal transduction]
GO:0060395 [SMAD protein signal transduction]
Show all
819 aa
93.5 kDa
No 1
NUP93-202
ENSP00000440235
ENST00000542526
Q8N1F7
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0005829 [cytosol]
GO:0006606 [protein import into nucleus]
GO:0006913 [nucleocytoplasmic transport]
GO:0006998 [nuclear envelope organization]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016973 [poly(A)+ mRNA export from nucleus]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0034399 [nuclear periphery]
GO:0051028 [mRNA transport]
GO:0051292 [nuclear pore complex assembly]
GO:0060391 [positive regulation of SMAD protein signal transduction]
GO:0060395 [SMAD protein signal transduction]
Show all
696 aa
79.9 kDa
No 1
NUP93-203
ENSP00000457902
ENST00000562496
H3BV11
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
Show all
136 aa
15.2 kDa
No 0
NUP93-204
ENSP00000458078
ENST00000563405
H3BVE2
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0051028 [mRNA transport]
Show all
117 aa
13.1 kDa
No 0
NUP93-207
ENSP00000456196
ENST00000563486
H3BRD9
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0051028 [mRNA transport]
Show all
140 aa
15.8 kDa
No 0
NUP93-208
ENSP00000455230
ENST00000563858
H3BPA9
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0051028 [mRNA transport]
Show all
229 aa
26.3 kDa
No 0
NUP93-210
ENSP00000458039
ENST00000564887
Q8N1F7
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0005829 [cytosol]
GO:0006606 [protein import into nucleus]
GO:0006913 [nucleocytoplasmic transport]
GO:0006998 [nuclear envelope organization]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016973 [poly(A)+ mRNA export from nucleus]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0034399 [nuclear periphery]
GO:0051028 [mRNA transport]
GO:0051292 [nuclear pore complex assembly]
GO:0060391 [positive regulation of SMAD protein signal transduction]
GO:0060395 [SMAD protein signal transduction]
Show all
696 aa
79.9 kDa
No 1
NUP93-211
ENSP00000456264
ENST00000566315
H3BRI8
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
Show all
151 aa
17 kDa
No 0
NUP93-212
ENSP00000454935
ENST00000566678
H3BNN5
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
Show all
132 aa
14.8 kDa
No 0
NUP93-214
ENSP00000455181
ENST00000567081
H3BP72
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
16 aa
2.1 kDa
No 0
NUP93-215
ENSP00000455210
ENST00000567641
H3BP95
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
Show all
156 aa
17.8 kDa
No 0
NUP93-216
ENSP00000454844
ENST00000568283
H3BNG7
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
40 aa
4.8 kDa
No 0
NUP93-217
ENSP00000454285
ENST00000568656
H3BM93
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
Show all
178 aa
19.9 kDa
No 0
NUP93-218
ENSP00000457907
ENST00000569322
H3BV15
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0051028 [mRNA transport]
Show all
84 aa
9.8 kDa
No 0
NUP93-220
ENSP00000458101
ENST00000569842
H3BVG0
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
GO:0051028 [mRNA transport]
Show all
880 aa
99.6 kDa
No 1
NUP93-221
ENSP00000454587
ENST00000569863
H3BMX0
[Direct mapping] Nuclear pore complex protein Nup93
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005643 [nuclear pore]
GO:0006913 [nucleocytoplasmic transport]
GO:0017056 [structural constituent of nuclear pore]
GO:0031965 [nuclear membrane]
Show all
125 aa
14.1 kDa
No 0

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