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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:184.9 nTPM
HPA Brain:1370.9 nTPM
GTEx:184.9 nTPM
FANTOM5:131.3 Scaled Tags Per Million
Pig:88.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1370.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1370.9
2565 Male, age 75, midline 1752.5
2194 Female, age 79, both hemispheres 1542.1
1981 Female, age 72, midline 1207.0
2048 Male, age 55, midline 1202.8
2816 Male, age 47, midline 1150.3
Cervical spinal cord, dorsal horn
nTPM: 1213.9
1877 Male, age 55, unknown 1454.3
2173 Female, age 72, unknown 1450.4
2069 Male, age 47, both hemispheres 1375.0
2296 Male, age 66, both hemispheres 1367.8
2297 Male, age 75, both hemispheres 855.3
2721 Male, age 90, both hemispheres 780.3
Cervical spinal cord, ventral horn
nTPM: 1230.0
2068 Male, age 55, unknown 1761.7
2809 Male, age 90, both hemispheres 1695.9
2480 Male, age 75, both hemispheres 1575.7
2820 Female, age 79, both hemispheres 949.8
2098 Female, age 72, unknown 736.4
2295 Male, age 66, both hemispheres 660.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 184.9
Samples: 159

Max nTPM: 723.1
Min nTPM: 33.2
Std nTPM: 91.6
Median nTPM: 164.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 723.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 468.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 398.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 394.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 374.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 365.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 355.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 346.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 340.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 338.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 328.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 325.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 319.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 319.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 312.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 310.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 302.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 299.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 293.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 289.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 286.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 283.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 279.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 276.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 273.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 273.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 272.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 270.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 269.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 268.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 265.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 250.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 249.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 246.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 241.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 241.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 240.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 228.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 226.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 225.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 225.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 222.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 220.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 219.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 218.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 215.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 206.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 205.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 204.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 204.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 203.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 200.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 200.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 199.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 196.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 194.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 193.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 193.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 192.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 189.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 188.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 188.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 186.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 184.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 181.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 178.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 176.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 175.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 172.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 172.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 170.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 169.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 169.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 167.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 167.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 167.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 167.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 166.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 164.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 164.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 163.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 162.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 161.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 160.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 159.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 159.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 158.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 158.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 154.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 154.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 150.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 150.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 148.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 147.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 146.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 145.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 145.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 145.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 144.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 144.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 143.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 143.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 143.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 143.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 143.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 142.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 141.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 140.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 137.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 136.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 136.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 136.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 135.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 135.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 133.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 133.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 133.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 131.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 131.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 126.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 124.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 122.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 120.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 114.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 114.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 113.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 113.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 112.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 112.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 112.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 112.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 111.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 110.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 108.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 108.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 107.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 102.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 102.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 101.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 99.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 99.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 97.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 93.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 91.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 91.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 90.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 83.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 78.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 77.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 73.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 71.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 71.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 67.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 63.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 60.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 58.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 53.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 46.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 33.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

131.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 131.3
FF:10181-103D1 60 years, female 199.2
FF:10159-103A6 76 years, female 63.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 88.5
Samples: 4

Max nTPM: 95.2
Min nTPM: 77.9
Sample A Female 95.2
Sample B Female 87.3
Sample C Male 77.9
Sample D Male 93.4
Ventral spinal cord
nTPM: 85.1
Samples: 4

Max nTPM: 91.3
Min nTPM: 81.2
Sample A Female 91.3
Sample B Female 81.2
Sample C Male 81.4
Sample D Male 86.4

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