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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:194.9 nTPM
HPA Brain:123.9 nTPM
GTEx:194.9 nTPM
FANTOM5:213.8 Scaled Tags Per Million
Pig:151.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 110.6
2816 Male, age 47, midline 139.0
2194 Female, age 79, both hemispheres 122.4
1981 Female, age 72, midline 113.2
2048 Male, age 55, midline 100.7
2565 Male, age 75, midline 77.6
Cervical spinal cord, dorsal horn
nTPM: 123.9
2296 Male, age 66, both hemispheres 250.8
2173 Female, age 72, unknown 157.5
2069 Male, age 47, both hemispheres 102.7
1877 Male, age 55, unknown 101.9
2721 Male, age 90, both hemispheres 72.5
2297 Male, age 75, both hemispheres 58.1
Cervical spinal cord, ventral horn
nTPM: 123.3
2820 Female, age 79, both hemispheres 154.7
2068 Male, age 55, unknown 150.0
2098 Female, age 72, unknown 137.5
2295 Male, age 66, both hemispheres 101.8
2480 Male, age 75, both hemispheres 101.1
2809 Male, age 90, both hemispheres 94.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 194.9
Samples: 159

Max nTPM: 474.5
Min nTPM: 35.2
Std nTPM: 84.4
Median nTPM: 187.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 474.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 406.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 396.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 390.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 366.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 363.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 354.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 353.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 342.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 341.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 331.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 325.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 322.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 318.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 315.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 313.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 312.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 308.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 306.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 297.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 295.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 293.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 292.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 292.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 285.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 285.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 283.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 283.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 275.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 269.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 267.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 264.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 260.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 260.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 257.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 253.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 253.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 247.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 246.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 245.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 245.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 244.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 243.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 243.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 239.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 237.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 236.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 233.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 233.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 232.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 231.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 230.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 229.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 222.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 220.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 219.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 218.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 217.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 215.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 213.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 209.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 207.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 207.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 207.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 203.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 203.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 200.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 199.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 198.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 198.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 197.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 197.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 196.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 196.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 196.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 195.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 195.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 194.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 190.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 187.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 186.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 184.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 183.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 183.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 182.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 182.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 181.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 180.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 178.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 176.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 171.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 171.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 171.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 169.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 169.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 166.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 163.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 163.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 161.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 160.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 159.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 155.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 155.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 154.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 152.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 151.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 149.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 148.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 147.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 145.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 145.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 144.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 143.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 143.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 143.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 136.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 135.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 133.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 132.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 131.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 125.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 124.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 122.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 121.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 121.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 121.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 121.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 120.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 118.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 116.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 116.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 115.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 112.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 111.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 103.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 103.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 102.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 102.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 101.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 98.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 95.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 93.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 93.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 91.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 89.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 85.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 85.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 83.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 78.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 76.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 70.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 65.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 65.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 61.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 53.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 50.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 49.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 43.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 35.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

213.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 213.8
FF:10181-103D1 60 years, female 243.3
FF:10159-103A6 76 years, female 184.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 128.3
Samples: 4

Max nTPM: 155.5
Min nTPM: 113.7
Sample A Female 116.5
Sample B Female 127.5
Sample C Male 113.7
Sample D Male 155.5
Ventral spinal cord
nTPM: 151.2
Samples: 4

Max nTPM: 207.7
Min nTPM: 116.1
Sample A Female 153.8
Sample B Female 116.1
Sample C Male 127.3
Sample D Male 207.7

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