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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:299.3 nTPM
HPA Brain:285.6 nTPM
GTEx:299.3 nTPM
FANTOM5:74.0 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:86.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.6
Sample id Sample description nTPM
Amygdala
nTPM: 258.7
2695 Female, age 67, right hemisphere 321.0
1987 Female, age 91, left hemisphere 261.6
2517 Female, age 94, left hemisphere 252.4
2814 Male, age 76, right hemisphere 237.1
2514 Male, age 75, right hemisphere 221.3
Basal amygdala
nTPM: 208.1
2609 Male, age 75, right hemisphere 349.1
2827 Female, age 67, right hemisphere 206.3
2110 Male, age 80, left hemisphere 197.2
2243 Female, age 91, right hemisphere 182.8
1955 Male, age 76, both hemispheres 165.4
2685 Female, age 94, left hemisphere 147.8
Central amygdala
nTPM: 285.6
2515 Male, age 75, right hemisphere 455.9
1905 Male, age 76, both hemispheres 299.6
2826 Female, age 94, left hemisphere 299.6
2239 Male, age 80, left hemisphere 219.9
2701 Female, age 91, right hemisphere 152.9
Corticomedial amygdala
nTPM: 196.6
2428 Male, age 75, right hemisphere 343.1
2535 Female, age 67, right hemisphere 207.9
2829 Male, age 80, left hemisphere 185.8
2242 Female, age 91, right hemisphere 183.5
2429 Female, age 94, left hemisphere 146.0
2240 Male, age 76, both hemispheres 113.2
Lateral amygdala
nTPM: 276.1
2516 Male, age 75, right hemisphere 385.0
2256 Male, age 80, left hemisphere 336.6
2830 Female, age 67, right hemisphere 305.5
2534 Female, age 94, left hemisphere 224.0
2255 Female, age 91, right hemisphere 214.8
1883 Male, age 76, both hemispheres 190.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

299.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 299.3
Samples: 152

Max nTPM: 804.3
Min nTPM: 18.8
Std nTPM: 150.3
Median nTPM: 262.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 804.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 793.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 777.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 711.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 608.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 596.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 591.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 585.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 564.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 564.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 546.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 540.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 536.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 535.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 530.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 525.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 498.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 494.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 492.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 477.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 467.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 464.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 461.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 455.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 453.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 449.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 445.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 441.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 440.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 433.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 426.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 422.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 408.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 404.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 394.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 394.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 388.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 387.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 386.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 384.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 375.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 374.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 357.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 346.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 345.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 341.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 340.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 334.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 333.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 330.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 328.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 324.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 323.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 322.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 319.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 316.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 314.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 313.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 309.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 308.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 304.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 304.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 300.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 298.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 289.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 286.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 279.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 277.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 277.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 277.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 277.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 274.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 271.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 268.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 264.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 262.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 261.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 261.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 258.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 258.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 255.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 255.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 253.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 251.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 241.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 239.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 239.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 238.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 237.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 236.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 233.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 233.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 232.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 226.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 225.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 225.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 223.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 222.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 219.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 219.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 216.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 212.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 211.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 208.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 203.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 202.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 198.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 198.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 197.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 197.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 195.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 194.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 192.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 187.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 183.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 182.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 181.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 181.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 179.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 179.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 179.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 177.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 174.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 170.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 165.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 165.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 165.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 162.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 159.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 157.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 156.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 155.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 155.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 151.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 150.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 147.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 144.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 142.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 141.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 137.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 130.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 123.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 122.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 122.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 120.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 114.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 109.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 103.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 92.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 89.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 75.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 18.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 74.0
FF:10151-102I7 76 years, female 74.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.6
Pig sample Sample description nTPM
Amygdala
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.3
Sample A Female 0.5
Sample B Female 0.5
Sample C Male 0.3
Sample D Male 0.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 86.8
Samples: 4

Max nTPM: 110.3
Min nTPM: 78.2
Sample A Male 78.2
Sample B Male 78.2
Sample C Female 110.3
Sample D Female 80.3

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