MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:142.4 nTPM
HPA Brain:94.0 nTPM
GTEx:142.4 nTPM
FANTOM5:95.6 Scaled Tags Per Million
Pig:108.2 nTPM
Mouse:123.5 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 94.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.7
2586 Male, age 75, left hemisphere 142.2
2666 Male, age 74, left hemisphere 101.9
2019 Male, age 18, unknown 94.9
1827 Male, age 72, unknown 92.1
2411 Female, age 72, unknown 89.3
2828 Female, age 72, unknown 82.7
2219 Male, age 76, both hemispheres 80.0
1870 Female, age 42, unknown 76.8
1830 Male, age 51, unknown 69.0
1833 Male, age 53, unknown 67.9
Dorsal raphe nucleus
nTPM: 84.5
2047 Male, age 72, unknown 92.8
2298 Female, age 72, unknown 91.4
1828 Male, age 53, unknown 91.2
2750 Male, age 76, both hemispheres 76.5
2016 Female, age 72, unknown 70.5
Inferior colliculus
nTPM: 78.5
2097 Female, age 72, unknown 84.9
1890 Male, age 53, unknown 78.8
2849 Male, age 72, unknown 76.4
1848 Female, age 42, unknown 74.0
Median raphe nucleus
nTPM: 83.3
2220 Male, age 76, midline 83.3
Periaquaductal grey, anterior
nTPM: 94.0
1795 Male, age 51, unknown 100.7
2502 Female, age 75, unknown 94.4
1947 Male, age 18, unknown 87.0
Periaquaductal grey, dorsal
nTPM: 70.3
1840 Male, age 53, unknown 82.6
1831 Male, age 72, unknown 67.8
2464 Female, age 72, unknown 67.8
2850 Male, age 76, both hemispheres 62.9
Periaquaductal grey, lateral
nTPM: 62.9
2053 Male, age 18, unknown 65.6
2140 Male, age 76, both hemispheres 61.8
2272 Male, age 74, both hemispheres 61.3
Pretectal area
nTPM: 88.0
1817 Female, age 42, unknown 118.2
2007 Male, age 72, unknown 116.7
1816 Male, age 51, unknown 111.9
1944 Female, age 72, unknown 103.2
1815 Male, age 53, unknown 96.7
2667 Female, age 75, unknown 82.8
2224 Female, age 72, unknown 72.7
2825 Male, age 18, unknown 72.5
2407 Male, age 75, both hemispheres 69.9
2273 Male, age 74, both hemispheres 64.8
2316 Male, age 76, right hemisphere 58.3
Red nucleus
nTPM: 80.5
2785 Male, age 18, unknown 96.5
2588 Male, age 74, left hemisphere 96.4
2503 Female, age 72, unknown 90.8
2584 Male, age 75, left hemisphere 89.1
1821 Female, age 72, unknown 85.2
2769 Male, age 72, unknown 82.2
2725 Female, age 75, unknown 77.0
2227 Male, age 72, unknown 76.1
1954 Female, age 42, unknown 75.1
1865 Male, age 51, unknown 70.2
1904 Male, age 53, unknown 67.4
2823 Male, age 76, right hemisphere 60.1
Substantia nigra
nTPM: 92.5
1916 Female, age 42, unknown 122.8
1851 Male, age 51, unknown 110.0
2665 Male, age 74, both hemispheres 107.4
1889 Female, age 72, unknown 98.5
1941 Male, age 53, unknown 94.4
2583 Male, age 75, right hemisphere 90.7
2699 Male, age 18, unknown 82.4
2241 Male, age 72, unknown 76.8
2409 Female, age 72, unknown 71.4
2590 Female, age 75, unknown 70.9
Superior colliculus
nTPM: 84.9
2668 Female, age 75, unknown 114.5
2664 Male, age 75, both hemispheres 98.6
1796 Male, age 53, unknown 94.1
2087 Female, age 72, unknown 91.0
2261 Male, age 18, unknown 86.3
2587 Male, age 74, left hemisphere 76.1
1839 Male, age 51, unknown 74.8
1895 Male, age 76, right hemisphere 73.4
1913 Female, age 42, unknown 73.1
1995 Male, age 72, unknown 67.5
Ventral tegmental area
nTPM: 86.5
1915 Female, age 42, unknown 98.0
2410 Female, age 72, unknown 94.7
2218 Male, age 76, both hemispheres 87.0
1942 Male, age 51, unknown 82.2
2223 Female, age 72, unknown 79.6
2021 Male, age 53, unknown 77.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 142.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 142.4
Samples: 139

Max nTPM: 281.8
Min nTPM: 72.2
Std nTPM: 35.2
Median nTPM: 138.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 281.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 237.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 235.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 233.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 211.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 209.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 207.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 204.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 199.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 194.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 193.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.6
FF:10158-103A5 76 years, female 95.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 108.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 103.4
Samples: 4

Max nTPM: 140.6
Min nTPM: 70.9
Sample A Female 140.6
Sample B Female 80.6
Sample C Male 121.4
Sample D Male 70.9
Midbrain
nTPM: 103.6
Samples: 4

Max nTPM: 119.3
Min nTPM: 90.7
Sample A Female 109.5
Sample B Female 90.7
Sample C Male 119.3
Sample D Male 95.0
Periaqueductal gray
nTPM: 85.6
Samples: 3

Max nTPM: 99.2
Min nTPM: 75.8
Sample B Female 81.9
Sample C Male 99.2
Sample D Male 75.8
Superior colliculi
nTPM: 108.2
Samples: 4

Max nTPM: 126.2
Min nTPM: 90.3
Sample A Female 126.2
Sample B Female 90.3
Sample C Male 112.7
Sample D Male 103.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 123.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.5
Samples: 4

Max nTPM: 129.6
Min nTPM: 115.9
Sample A Male 129.6
Sample B Male 115.9
Sample C Female 122.0
Sample D Female 126.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
71608348 Antisense, RP_050927_01_E04, Mouse strain C57BL/6J (56 days, male) 7.0
77620401 Antisense, RP_070205_01_F10, Mouse strain C57BL/6J (56 days, male) 3.7
79912552 Antisense, RP_080109_01_B07, Mouse strain C57BL/6J (56 days, male) 3.4

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