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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:178.0 nTPM
HPA Brain:94.8 nTPM
GTEx:178.0 nTPM
FANTOM5:178.6 Scaled Tags Per Million
Pig:72.2 nTPM
Mouse:135.9 nTPM
Allen mouse:8.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.8
Sample id Sample description nTPM
Amygdala
nTPM: 91.1
2695 Female, age 67, right hemisphere 104.4
2814 Male, age 76, right hemisphere 103.3
2517 Female, age 94, left hemisphere 89.4
2514 Male, age 75, right hemisphere 79.2
1987 Female, age 91, left hemisphere 79.0
Basal amygdala
nTPM: 89.3
2609 Male, age 75, right hemisphere 108.6
2685 Female, age 94, left hemisphere 96.9
2827 Female, age 67, right hemisphere 84.8
2110 Male, age 80, left hemisphere 84.0
2243 Female, age 91, right hemisphere 81.9
1955 Male, age 76, both hemispheres 79.3
Central amygdala
nTPM: 94.8
2826 Female, age 94, left hemisphere 139.3
1905 Male, age 76, both hemispheres 96.0
2515 Male, age 75, right hemisphere 90.5
2239 Male, age 80, left hemisphere 76.3
2701 Female, age 91, right hemisphere 71.9
Corticomedial amygdala
nTPM: 80.7
2428 Male, age 75, right hemisphere 94.7
2829 Male, age 80, left hemisphere 94.3
2535 Female, age 67, right hemisphere 80.4
2429 Female, age 94, left hemisphere 78.5
2242 Female, age 91, right hemisphere 73.1
2240 Male, age 76, both hemispheres 63.5
Lateral amygdala
nTPM: 92.6
2534 Female, age 94, left hemisphere 120.3
2516 Male, age 75, right hemisphere 105.1
1883 Male, age 76, both hemispheres 96.5
2830 Female, age 67, right hemisphere 85.2
2256 Male, age 80, left hemisphere 75.4
2255 Female, age 91, right hemisphere 73.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 178.0
Samples: 152

Max nTPM: 551.9
Min nTPM: 44.3
Std nTPM: 60.6
Median nTPM: 168.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 551.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 453.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 341.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 321.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 288.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 281.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 278.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 277.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 266.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 264.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 254.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 252.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 247.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 245.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 245.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 240.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 240.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 233.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 231.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 230.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 228.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 227.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 226.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 224.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 223.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 222.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 221.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 221.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 221.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 213.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 212.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 212.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 211.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 211.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 210.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 203.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 203.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 201.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 200.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 199.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 199.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 196.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 195.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 195.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 193.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 192.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 191.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 191.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 191.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 191.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 191.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 190.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 189.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 187.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 187.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 184.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 183.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 182.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 181.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 181.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 179.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 178.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 178.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 178.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 177.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 176.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 175.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 175.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 175.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 175.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 174.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 172.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 171.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 171.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 170.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 169.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 168.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 168.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 167.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 166.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 166.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 164.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 163.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 163.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 163.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 162.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 162.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 162.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 161.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 161.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 160.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 159.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 158.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 157.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 157.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 156.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 156.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 153.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 153.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 151.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 149.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 149.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 148.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 148.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 148.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 145.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 144.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 143.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 143.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 141.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 140.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 140.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 138.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 138.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 137.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 136.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 135.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 133.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 133.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 130.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 130.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 130.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 130.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 129.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 129.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 129.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 129.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 128.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 127.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 125.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 125.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 124.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 124.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 123.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 119.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 118.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 118.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 116.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 115.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 114.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 113.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 111.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 110.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 110.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 107.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 105.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 103.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 103.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 102.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 101.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 44.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

178.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 178.6
FF:10151-102I7 76 years, female 178.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.2
Pig sample Sample description nTPM
Amygdala
nTPM: 72.2
Samples: 4

Max nTPM: 100.3
Min nTPM: 59.4
Sample A Female 100.3
Sample B Female 59.4
Sample C Male 65.8
Sample D Male 63.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 135.9
Samples: 4

Max nTPM: 144.0
Min nTPM: 131.0
Sample A Male 135.5
Sample B Male 131.0
Sample C Female 144.0
Sample D Female 133.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.9
71608348 Antisense, RP_050927_01_E04, Mouse strain C57BL/6J (56 days, male) 13.7
77620401 Antisense, RP_070205_01_F10, Mouse strain C57BL/6J (56 days, male) 8.7
79912552 Antisense, RP_080109_01_B07, Mouse strain C57BL/6J (56 days, male) 4.3

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