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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:131.5 nTPM
FANTOM5:125.0 Scaled Tags Per Million
Pig:91.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041222Antibody HPA043531Antibody CAB037202Antibody CAB037209
Glial cells Not detectedNot detectedMediumMedium
Neuronal cells LowNot detectedHighMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 131.5
Samples: 246

Max nTPM: 270.5
Min nTPM: 69.5
Std nTPM: 32.4
Median nTPM: 125.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 270.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 261.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 231.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 225.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 221.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 220.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 218.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 210.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 210.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 210.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 204.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 201.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 200.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 194.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 191.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 189.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 187.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 184.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 180.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 180.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 176.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 175.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 174.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 170.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 168.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 166.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 165.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 165.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 163.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 163.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 162.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 162.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 162.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 161.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 161.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 160.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 159.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 158.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 158.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 157.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 157.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 157.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 156.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 156.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 155.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 155.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 154.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 153.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 153.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 152.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 151.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 151.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 149.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 149.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 148.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 148.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 148.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 148.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 147.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 146.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 145.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 145.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 145.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 145.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 144.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 144.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 144.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 144.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 143.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 143.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 143.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 142.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 142.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 141.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 140.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 140.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 140.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 140.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 140.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 139.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 139.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 139.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 138.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 138.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 138.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 137.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 137.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 137.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 137.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 136.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 135.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 135.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 135.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 134.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 134.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 134.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 133.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 132.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 131.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 131.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 131.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 131.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 131.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 131.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 130.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 130.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 130.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 129.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 129.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 129.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 129.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 128.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 128.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 128.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 127.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 127.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 127.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 127.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 127.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 126.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 126.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 126.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 125.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 125.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 125.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 125.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 124.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 124.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 124.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 124.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 124.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 124.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 123.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 123.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 123.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 123.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 123.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 122.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 122.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 122.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 122.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 121.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 121.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 121.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 120.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 120.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 120.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 119.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 119.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 118.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 118.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 118.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 118.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 118.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 118.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 117.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 117.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 117.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 116.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 116.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 116.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 116.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 115.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 115.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 115.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 115.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 114.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 113.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 113.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 113.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 113.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 112.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 112.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 112.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 112.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 112.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 112.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 111.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 111.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 111.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 111.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 110.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 110.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 110.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 110.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 110.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 110.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 109.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 109.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 109.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 109.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 109.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 108.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 108.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 108.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 108.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 107.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 106.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 106.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 105.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 105.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 104.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 104.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 104.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 103.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 103.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 103.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 103.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 103.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 102.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 102.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 102.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 102.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 102.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 101.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 101.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 101.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 100.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 100.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 100.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 98.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 98.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 97.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 97.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 97.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 97.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 97.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 94.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 94.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 94.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 94.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 89.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 88.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 86.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 85.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 84.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 84.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 83.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 82.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 79.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 77.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 75.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 74.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 72.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 71.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 69.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 125.0
FF:10164-103B2 76 years, female 125.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.8
Pig sample Sample description nTPM
Caudate
nTPM: 91.8
Samples: 4

Max nTPM: 111.5
Min nTPM: 75.7
Sample A Female 75.7
Sample B Female 97.7
Sample C Male 111.5
Sample D Male 82.3

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