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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:478.0 nTPM
HPA Brain:241.6 nTPM
GTEx:478.0 nTPM
FANTOM5:56.4 Scaled Tags Per Million
Pig:108.7 nTPM
Mouse:595.7 nTPM
Allen mouse:11.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.6
Sample id Sample description nTPM
Amygdala
nTPM: 235.5
2814 Male, age 76, right hemisphere 259.0
2517 Female, age 94, left hemisphere 245.3
2514 Male, age 75, right hemisphere 229.1
1987 Female, age 91, left hemisphere 228.3
2695 Female, age 67, right hemisphere 216.0
Basal amygdala
nTPM: 228.7
2110 Male, age 80, left hemisphere 252.1
2243 Female, age 91, right hemisphere 246.1
2685 Female, age 94, left hemisphere 242.0
1955 Male, age 76, both hemispheres 239.8
2609 Male, age 75, right hemisphere 229.4
2827 Female, age 67, right hemisphere 163.0
Central amygdala
nTPM: 241.6
2826 Female, age 94, left hemisphere 286.2
1905 Male, age 76, both hemispheres 254.2
2515 Male, age 75, right hemisphere 250.7
2239 Male, age 80, left hemisphere 232.8
2701 Female, age 91, right hemisphere 184.3
Corticomedial amygdala
nTPM: 237.2
2829 Male, age 80, left hemisphere 259.0
2242 Female, age 91, right hemisphere 258.6
2240 Male, age 76, both hemispheres 245.0
2428 Male, age 75, right hemisphere 236.3
2429 Female, age 94, left hemisphere 231.9
2535 Female, age 67, right hemisphere 192.6
Lateral amygdala
nTPM: 229.2
2534 Female, age 94, left hemisphere 292.2
2516 Male, age 75, right hemisphere 268.8
1883 Male, age 76, both hemispheres 219.9
2255 Female, age 91, right hemisphere 207.3
2256 Male, age 80, left hemisphere 198.4
2830 Female, age 67, right hemisphere 188.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

478.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 478.0
Samples: 152

Max nTPM: 1421.0
Min nTPM: 179.6
Std nTPM: 185.8
Median nTPM: 443.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1421.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1353.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1270.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 954.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 937.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 895.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 869.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 833.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 787.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 747.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 728.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 686.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 681.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 665.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 664.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 660.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 658.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 637.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 613.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 613.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 612.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 605.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 602.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 601.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 594.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 593.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 581.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 579.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 577.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 576.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 571.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 568.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 567.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 562.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 561.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 556.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 553.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 552.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 537.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 535.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 520.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 520.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 519.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 518.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 516.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 514.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 511.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 502.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 493.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 493.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 486.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 485.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 482.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 478.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 478.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 476.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 475.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 472.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 472.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 472.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 469.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 469.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 465.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 465.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 465.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 462.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 461.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 459.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 458.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 456.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 455.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 454.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 451.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 448.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 445.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 444.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 443.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 441.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 438.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 436.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 434.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 434.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 434.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 433.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 432.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 429.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 429.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 424.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 421.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 420.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 420.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 419.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 417.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 413.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 409.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 404.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 399.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 396.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 392.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 390.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 389.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 389.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 388.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 387.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 387.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 386.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 385.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 383.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 382.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 378.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 377.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 373.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 366.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 361.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 361.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 361.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 360.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 355.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 353.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 352.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 352.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 352.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 351.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 350.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 347.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 347.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 342.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 333.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 329.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 328.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 325.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 321.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 319.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 314.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 308.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 308.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 306.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 305.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 296.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 294.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 291.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 287.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 285.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 279.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 273.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 272.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 272.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 264.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 247.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 240.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 232.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 179.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

56.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 56.4
FF:10151-102I7 76 years, female 56.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.7
Pig sample Sample description nTPM
Amygdala
nTPM: 108.7
Samples: 4

Max nTPM: 149.8
Min nTPM: 79.2
Sample A Female 149.8
Sample B Female 100.3
Sample C Male 105.3
Sample D Male 79.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

595.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 595.7
Samples: 4

Max nTPM: 655.5
Min nTPM: 549.6
Sample A Male 581.7
Sample B Male 549.6
Sample C Female 655.5
Sample D Female 596.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.1
74822929 Antisense, RP_060321_01_A02, Mouse strain C57BL/6J (56 days, male) 11.1

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