MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.9 nTPM
HPA Brain:78.7 nTPM
GTEx:5.9 nTPM
FANTOM5:86.5 Scaled Tags Per Million
Pig:45.4 nTPM
Mouse:20.4 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.5
1830 Male, age 51, unknown 76.3
2666 Male, age 74, left hemisphere 74.4
2019 Male, age 18, unknown 74.0
2411 Female, age 72, unknown 73.1
1833 Male, age 53, unknown 68.5
1870 Female, age 42, unknown 67.2
2828 Female, age 72, unknown 63.7
2586 Male, age 75, left hemisphere 63.3
1827 Male, age 72, unknown 58.8
2219 Male, age 76, both hemispheres 56.0
Dorsal raphe nucleus
nTPM: 50.7
2750 Male, age 76, both hemispheres 66.6
1828 Male, age 53, unknown 51.7
2047 Male, age 72, unknown 50.0
2016 Female, age 72, unknown 46.7
2298 Female, age 72, unknown 38.5
Inferior colliculus
nTPM: 52.0
1890 Male, age 53, unknown 57.4
1848 Female, age 42, unknown 52.0
2097 Female, age 72, unknown 50.6
2849 Male, age 72, unknown 48.1
Median raphe nucleus
nTPM: 51.8
2220 Male, age 76, midline 51.8
Periaquaductal grey, anterior
nTPM: 48.5
1947 Male, age 18, unknown 53.5
2502 Female, age 75, unknown 46.6
1795 Male, age 51, unknown 45.5
Periaquaductal grey, dorsal
nTPM: 41.8
2464 Female, age 72, unknown 51.9
1831 Male, age 72, unknown 46.4
2850 Male, age 76, both hemispheres 34.5
1840 Male, age 53, unknown 34.3
Periaquaductal grey, lateral
nTPM: 42.8
2053 Male, age 18, unknown 48.9
2272 Male, age 74, both hemispheres 42.6
2140 Male, age 76, both hemispheres 36.8
Pretectal area
nTPM: 50.3
2007 Male, age 72, unknown 60.9
1815 Male, age 53, unknown 59.1
2407 Male, age 75, both hemispheres 59.0
1817 Female, age 42, unknown 57.1
1944 Female, age 72, unknown 53.1
2825 Male, age 18, unknown 47.8
1816 Male, age 51, unknown 45.5
2667 Female, age 75, unknown 45.0
2316 Male, age 76, right hemisphere 44.5
2224 Female, age 72, unknown 41.0
2273 Male, age 74, both hemispheres 40.0
Red nucleus
nTPM: 78.7
2588 Male, age 74, left hemisphere 96.8
2503 Female, age 72, unknown 86.2
1865 Male, age 51, unknown 86.0
1904 Male, age 53, unknown 80.6
1821 Female, age 72, unknown 79.0
2785 Male, age 18, unknown 78.4
1954 Female, age 42, unknown 76.4
2227 Male, age 72, unknown 76.4
2769 Male, age 72, unknown 76.0
2584 Male, age 75, left hemisphere 75.2
2823 Male, age 76, right hemisphere 73.7
2725 Female, age 75, unknown 60.1
Substantia nigra
nTPM: 58.0
2583 Male, age 75, right hemisphere 70.6
2590 Female, age 75, unknown 63.9
2409 Female, age 72, unknown 63.4
1889 Female, age 72, unknown 62.0
1941 Male, age 53, unknown 59.6
1851 Male, age 51, unknown 56.7
1916 Female, age 42, unknown 56.3
2241 Male, age 72, unknown 52.5
2665 Male, age 74, both hemispheres 47.6
2699 Male, age 18, unknown 47.4
Superior colliculus
nTPM: 57.1
2668 Female, age 75, unknown 76.1
1913 Female, age 42, unknown 64.1
2587 Male, age 74, left hemisphere 63.0
1995 Male, age 72, unknown 58.4
1839 Male, age 51, unknown 56.3
1895 Male, age 76, right hemisphere 56.1
1796 Male, age 53, unknown 51.1
2261 Male, age 18, unknown 50.9
2087 Female, age 72, unknown 50.1
2664 Male, age 75, both hemispheres 44.8
Ventral tegmental area
nTPM: 57.5
2410 Female, age 72, unknown 72.2
2223 Female, age 72, unknown 68.0
1942 Male, age 51, unknown 53.8
2218 Male, age 76, both hemispheres 52.0
2021 Male, age 53, unknown 50.8
1915 Female, age 42, unknown 48.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.9
Samples: 139

Max nTPM: 22.1
Min nTPM: 1.6
Std nTPM: 2.3
Median nTPM: 5.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 22.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 13.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 12.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 10.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 9.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 9.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 9.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 8.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 8.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 8.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.5
FF:10158-103A5 76 years, female 86.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.6
Samples: 4

Max nTPM: 50.1
Min nTPM: 21.6
Sample A Female 29.2
Sample B Female 21.6
Sample C Male 33.5
Sample D Male 50.1
Midbrain
nTPM: 45.4
Samples: 4

Max nTPM: 75.6
Min nTPM: 31.3
Sample A Female 75.6
Sample B Female 31.3
Sample C Male 42.6
Sample D Male 32.2
Periaqueductal gray
nTPM: 25.6
Samples: 3

Max nTPM: 29.0
Min nTPM: 22.4
Sample B Female 29.0
Sample C Male 22.4
Sample D Male 25.5
Superior colliculi
nTPM: 32.9
Samples: 4

Max nTPM: 42.3
Min nTPM: 20.9
Sample A Female 26.6
Sample B Female 20.9
Sample C Male 41.6
Sample D Male 42.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 23.1
Min nTPM: 15.3
Sample A Male 15.3
Sample B Male 21.1
Sample C Female 23.1
Sample D Female 22.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
69444897 Antisense, RP_050414_04_H01, Mouse strain C57BL/6J (56 days, male) 3.1

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