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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:128.9 nTPM
HPA Brain:134.8 nTPM
GTEx:128.9 nTPM
FANTOM5:132.6 Scaled Tags Per Million
Pig:102.1 nTPM
Mouse:114.1 nTPM
Allen mouse:3.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.8
Sample id Sample description nTPM
Amygdala
nTPM: 105.8
2695 Female, age 67, right hemisphere 113.9
2517 Female, age 94, left hemisphere 109.9
2814 Male, age 76, right hemisphere 103.2
1987 Female, age 91, left hemisphere 102.8
2514 Male, age 75, right hemisphere 99.1
Basal amygdala
nTPM: 128.6
2827 Female, age 67, right hemisphere 176.3
2685 Female, age 94, left hemisphere 140.3
2609 Male, age 75, right hemisphere 127.6
2243 Female, age 91, right hemisphere 120.3
1955 Male, age 76, both hemispheres 106.3
2110 Male, age 80, left hemisphere 100.7
Central amygdala
nTPM: 122.0
2826 Female, age 94, left hemisphere 186.6
2515 Male, age 75, right hemisphere 115.7
2239 Male, age 80, left hemisphere 113.7
2701 Female, age 91, right hemisphere 97.9
1905 Male, age 76, both hemispheres 96.0
Corticomedial amygdala
nTPM: 112.4
2535 Female, age 67, right hemisphere 149.1
2829 Male, age 80, left hemisphere 116.2
2242 Female, age 91, right hemisphere 112.8
2429 Female, age 94, left hemisphere 105.4
2428 Male, age 75, right hemisphere 100.8
2240 Male, age 76, both hemispheres 89.8
Lateral amygdala
nTPM: 134.8
2830 Female, age 67, right hemisphere 162.9
2534 Female, age 94, left hemisphere 151.2
2256 Male, age 80, left hemisphere 149.4
2255 Female, age 91, right hemisphere 117.6
1883 Male, age 76, both hemispheres 116.0
2516 Male, age 75, right hemisphere 111.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 128.9
Samples: 152

Max nTPM: 238.0
Min nTPM: 46.7
Std nTPM: 34.4
Median nTPM: 127.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 238.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 216.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 210.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 207.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 204.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 199.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 187.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 186.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 180.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 180.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 178.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 176.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 176.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 175.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 175.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 174.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 170.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 168.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 168.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 166.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 165.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 165.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 165.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 163.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 163.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 162.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 162.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 161.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 161.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 156.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 156.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 155.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 154.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 150.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 150.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 150.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 149.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 149.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 149.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 148.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 148.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 147.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 147.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 147.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 146.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 146.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 146.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 146.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 143.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 143.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 142.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 142.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 142.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 142.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 141.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 139.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 139.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 139.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 138.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 138.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 138.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 137.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 136.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 136.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 135.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 135.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 135.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 134.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 134.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 133.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 132.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 132.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 132.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 129.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 129.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 128.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 127.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 126.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 126.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 126.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 125.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 125.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 124.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 124.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 123.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 122.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 121.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 120.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 120.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 119.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 117.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 116.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 115.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 114.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 114.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 114.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 113.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 113.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 112.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 112.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 112.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 111.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 111.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 110.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 110.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 109.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 108.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 108.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 107.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 106.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 106.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 105.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 105.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 104.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 102.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 101.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 100.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 100.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 100.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 100.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 100.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 100.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 97.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 97.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 96.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 96.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 95.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 94.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 94.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 94.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 92.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 90.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 90.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 89.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 89.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 89.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 88.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 88.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 88.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 86.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 86.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 86.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 80.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 79.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 76.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 75.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 71.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 64.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 58.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 55.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 47.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

132.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 132.6
FF:10151-102I7 76 years, female 132.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.1
Pig sample Sample description nTPM
Amygdala
nTPM: 102.1
Samples: 4

Max nTPM: 133.9
Min nTPM: 82.5
Sample A Female 133.9
Sample B Female 82.5
Sample C Male 97.9
Sample D Male 94.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 114.2
Samples: 4

Max nTPM: 132.7
Min nTPM: 102.6
Sample A Male 102.6
Sample B Male 109.5
Sample C Female 132.7
Sample D Female 111.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.6
71488768 Antisense, RP_050825_02_D12, Mouse strain C57BL/6J (56 days, male) 3.6

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