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SLC6A2
HPA
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  • SLC6A2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC6A2
Synonyms NAT1, NET, NET1, SLC6A5
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 6 member 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
FDA approved drug targets
Human disease related genes
Metabolic proteins
Plasma proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband q12.2
Chromosome location (bp) 55655988 - 55707645
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000103546 (version 109)
Entrez gene 6530
HGNC HGNC:11048
UniProt P23975 (UniProt - Evidence at protein level)
neXtProt NX_P23975
GeneCards SLC6A2
Antibodypedia SLC6A2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates sodium- and chloride-dependent transport of norepinephrine (also known as noradrenaline) 1, 2. Can also mediate sodium- and chloride-dependent transport of dopamine 3, 4.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Neurotransmitter transport, Symport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Sodium
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the sodium:neurotransmitter symporter family. This member is a multi-pass membrane protein, which is responsible for reuptake of norepinephrine into presynaptic nerve terminals and is a regulator of norepinephrine homeostasis. Mutations in this gene cause orthostatic intolerance, a syndrome characterized by lightheadedness, fatigue, altered mentation and syncope. Alternatively spliced transcript variants encoding different isoforms have been identified in this gene.[provided by RefSeq, Feb 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC6A2-201
ENSP00000219833
ENST00000219833
P23975
[Direct mapping] Sodium-dependent noradrenaline transporter
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003779 [actin binding]
GO:0005326 [neurotransmitter transmembrane transporter activity]
GO:0005328 [neurotransmitter:sodium symporter activity]
GO:0005330 [dopamine:sodium symporter activity]
GO:0005334 [norepinephrine:sodium symporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006836 [neurotransmitter transport]
GO:0007268 [chemical synaptic transmission]
GO:0008504 [monoamine transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015844 [monoamine transport]
GO:0015874 [norepinephrine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0032809 [neuronal cell body membrane]
GO:0035725 [sodium ion transmembrane transport]
GO:0042734 [presynaptic membrane]
GO:0043005 [neuron projection]
GO:0046872 [metal ion binding]
GO:0051583 [dopamine uptake involved in synaptic transmission]
GO:0051620 [norepinephrine uptake]
GO:0070050 [neuron cellular homeostasis]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
Show all
628 aa
70.5 kDa
No >9
SLC6A2-202
ENSP00000369237
ENST00000379906
P23975
[Direct mapping] Sodium-dependent noradrenaline transporter
Show all
A0A024R6T9
[Target identity:100%; Query identity:100%] Transporter
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003779 [actin binding]
GO:0005326 [neurotransmitter transmembrane transporter activity]
GO:0005328 [neurotransmitter:sodium symporter activity]
GO:0005330 [dopamine:sodium symporter activity]
GO:0005334 [norepinephrine:sodium symporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006836 [neurotransmitter transport]
GO:0007268 [chemical synaptic transmission]
GO:0008504 [monoamine transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015844 [monoamine transport]
GO:0015874 [norepinephrine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0032809 [neuronal cell body membrane]
GO:0035725 [sodium ion transmembrane transport]
GO:0042734 [presynaptic membrane]
GO:0043005 [neuron projection]
GO:0046872 [metal ion binding]
GO:0051583 [dopamine uptake involved in synaptic transmission]
GO:0051620 [norepinephrine uptake]
GO:0055085 [transmembrane transport]
GO:0070050 [neuron cellular homeostasis]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
GO:0098793 [presynapse]
Show all
617 aa
69.3 kDa
No >9
SLC6A2-203
ENSP00000394956
ENST00000414754
H3BM11
[Direct mapping] Transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0015293 [symporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
Show all
561 aa
62.9 kDa
No >9
SLC6A2-204
ENSP00000454439
ENST00000561820
H3BML6
[Direct mapping] Transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0005328 [neurotransmitter:sodium symporter activity]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006836 [neurotransmitter transport]
GO:0015293 [symporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
Show all
604 aa
67.7 kDa
No >9
SLC6A2-205
ENSP00000456210
ENST00000566163
H3BRE9
[Direct mapping] Transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0015293 [symporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
Show all
572 aa
64.3 kDa
No >9
SLC6A2-206
ENSP00000457375
ENST00000567238
P23975
[Direct mapping] Sodium-dependent noradrenaline transporter
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003779 [actin binding]
GO:0005326 [neurotransmitter transmembrane transporter activity]
GO:0005328 [neurotransmitter:sodium symporter activity]
GO:0005330 [dopamine:sodium symporter activity]
GO:0005334 [norepinephrine:sodium symporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006836 [neurotransmitter transport]
GO:0007268 [chemical synaptic transmission]
GO:0008504 [monoamine transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015844 [monoamine transport]
GO:0015874 [norepinephrine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0032809 [neuronal cell body membrane]
GO:0035725 [sodium ion transmembrane transport]
GO:0042734 [presynaptic membrane]
GO:0043005 [neuron projection]
GO:0046872 [metal ion binding]
GO:0051583 [dopamine uptake involved in synaptic transmission]
GO:0051620 [norepinephrine uptake]
GO:0070050 [neuron cellular homeostasis]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
Show all
512 aa
57.4 kDa
No >9
SLC6A2-207
ENSP00000456377
ENST00000568529
H3BRS0
[Direct mapping] Transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0005328 [neurotransmitter:sodium symporter activity]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006836 [neurotransmitter transport]
GO:0015293 [symporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
Show all
295 aa
33.2 kDa
No 5
SLC6A2-208
ENSP00000457473
ENST00000568943
P23975
[Direct mapping] Sodium-dependent noradrenaline transporter
Show all
A0A024R6T9
[Target identity:100%; Query identity:100%] Transporter
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003779 [actin binding]
GO:0005326 [neurotransmitter transmembrane transporter activity]
GO:0005328 [neurotransmitter:sodium symporter activity]
GO:0005330 [dopamine:sodium symporter activity]
GO:0005334 [norepinephrine:sodium symporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006836 [neurotransmitter transport]
GO:0007268 [chemical synaptic transmission]
GO:0008504 [monoamine transmembrane transporter activity]
GO:0009410 [response to xenobiotic stimulus]
GO:0009986 [cell surface]
GO:0015293 [symporter activity]
GO:0015844 [monoamine transport]
GO:0015874 [norepinephrine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0032809 [neuronal cell body membrane]
GO:0035725 [sodium ion transmembrane transport]
GO:0042734 [presynaptic membrane]
GO:0043005 [neuron projection]
GO:0043014 [alpha-tubulin binding]
GO:0045121 [membrane raft]
GO:0046872 [metal ion binding]
GO:0048265 [response to pain]
GO:0048487 [beta-tubulin binding]
GO:0051583 [dopamine uptake involved in synaptic transmission]
GO:0051620 [norepinephrine uptake]
GO:0055085 [transmembrane transport]
GO:0070050 [neuron cellular homeostasis]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
GO:0098793 [presynapse]
GO:0098810 [neurotransmitter reuptake]
Show all
617 aa
69.3 kDa
No >9
SLC6A2-209
ENSP00000460214
ENST00000574918
H3BRE9
[Direct mapping] Transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Hematologic diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0015293 [symporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0022857 [transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071702 [organic substance transport]
GO:0071705 [nitrogen compound transport]
Show all
572 aa
64.3 kDa
No >9

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