MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.8 nTPM
HPA Brain:63.4 nTPM
GTEx:42.8 nTPM
FANTOM5:210.6 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:21.7 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.8
2219 Male, age 76, both hemispheres 56.0
2411 Female, age 72, unknown 53.5
1830 Male, age 51, unknown 52.8
1833 Male, age 53, unknown 51.5
1870 Female, age 42, unknown 49.8
2019 Male, age 18, unknown 49.4
2666 Male, age 74, left hemisphere 44.8
2828 Female, age 72, unknown 42.6
1827 Male, age 72, unknown 42.4
2586 Male, age 75, left hemisphere 35.3
Dorsal raphe nucleus
nTPM: 42.9
2750 Male, age 76, both hemispheres 51.4
1828 Male, age 53, unknown 48.7
2016 Female, age 72, unknown 40.9
2047 Male, age 72, unknown 39.3
2298 Female, age 72, unknown 34.2
Inferior colliculus
nTPM: 43.4
2849 Male, age 72, unknown 51.8
1848 Female, age 42, unknown 44.8
1890 Male, age 53, unknown 40.7
2097 Female, age 72, unknown 36.2
Median raphe nucleus
nTPM: 63.4
2220 Male, age 76, midline 63.4
Periaquaductal grey, anterior
nTPM: 41.0
1947 Male, age 18, unknown 42.8
2502 Female, age 75, unknown 40.6
1795 Male, age 51, unknown 39.7
Periaquaductal grey, dorsal
nTPM: 45.0
2850 Male, age 76, both hemispheres 55.7
1831 Male, age 72, unknown 45.2
2464 Female, age 72, unknown 41.8
1840 Male, age 53, unknown 37.2
Periaquaductal grey, lateral
nTPM: 42.1
2140 Male, age 76, both hemispheres 47.6
2053 Male, age 18, unknown 40.8
2272 Male, age 74, both hemispheres 38.1
Pretectal area
nTPM: 45.9
1817 Female, age 42, unknown 49.8
1815 Male, age 53, unknown 49.6
1816 Male, age 51, unknown 47.8
2316 Male, age 76, right hemisphere 46.3
2224 Female, age 72, unknown 45.8
2407 Male, age 75, both hemispheres 45.6
2825 Male, age 18, unknown 44.9
2667 Female, age 75, unknown 44.6
1944 Female, age 72, unknown 44.3
2007 Male, age 72, unknown 44.1
2273 Male, age 74, both hemispheres 41.9
Red nucleus
nTPM: 49.9
2725 Female, age 75, unknown 57.9
2503 Female, age 72, unknown 57.3
1821 Female, age 72, unknown 54.0
2823 Male, age 76, right hemisphere 53.0
1954 Female, age 42, unknown 52.8
1904 Male, age 53, unknown 49.7
2227 Male, age 72, unknown 49.1
2769 Male, age 72, unknown 47.7
2588 Male, age 74, left hemisphere 47.6
1865 Male, age 51, unknown 46.0
2785 Male, age 18, unknown 43.2
2584 Male, age 75, left hemisphere 40.9
Substantia nigra
nTPM: 45.4
1916 Female, age 42, unknown 55.9
2699 Male, age 18, unknown 55.8
1941 Male, age 53, unknown 48.9
2665 Male, age 74, both hemispheres 45.8
1851 Male, age 51, unknown 44.5
1889 Female, age 72, unknown 42.7
2241 Male, age 72, unknown 42.5
2590 Female, age 75, unknown 40.4
2409 Female, age 72, unknown 39.1
2583 Male, age 75, right hemisphere 38.5
Superior colliculus
nTPM: 43.4
1913 Female, age 42, unknown 52.1
1995 Male, age 72, unknown 49.3
1895 Male, age 76, right hemisphere 47.4
1839 Male, age 51, unknown 45.7
2587 Male, age 74, left hemisphere 45.6
2668 Female, age 75, unknown 42.8
2087 Female, age 72, unknown 41.5
2261 Male, age 18, unknown 38.7
1796 Male, age 53, unknown 38.2
2664 Male, age 75, both hemispheres 33.1
Ventral tegmental area
nTPM: 49.1
2223 Female, age 72, unknown 58.8
2218 Male, age 76, both hemispheres 55.8
2021 Male, age 53, unknown 47.4
1942 Male, age 51, unknown 44.7
1915 Female, age 42, unknown 43.9
2410 Female, age 72, unknown 43.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.8
Samples: 139

Max nTPM: 66.4
Min nTPM: 22.9
Std nTPM: 7.5
Median nTPM: 41.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 66.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 61.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 60.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 57.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 56.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 56.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 55.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 55.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 54.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 54.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 210.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 210.6
FF:10158-103A5 76 years, female 210.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.5
Samples: 4

Max nTPM: 46.8
Min nTPM: 33.2
Sample A Female 46.8
Sample B Female 33.2
Sample C Male 38.2
Sample D Male 39.8
Midbrain
nTPM: 42.8
Samples: 4

Max nTPM: 59.9
Min nTPM: 33.9
Sample A Female 59.9
Sample B Female 39.5
Sample C Male 38.0
Sample D Male 33.9
Periaqueductal gray
nTPM: 34.5
Samples: 3

Max nTPM: 35.5
Min nTPM: 33.9
Sample B Female 34.0
Sample C Male 35.5
Sample D Male 33.9
Superior colliculi
nTPM: 40.5
Samples: 4

Max nTPM: 47.0
Min nTPM: 27.4
Sample A Female 47.0
Sample B Female 27.4
Sample C Male 46.8
Sample D Male 40.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 23.5
Min nTPM: 19.9
Sample A Male 19.9
Sample B Male 21.9
Sample C Female 23.5
Sample D Female 21.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
71608352 Antisense, RP_050927_01_E08, Mouse strain C57BL/6J (56 days, male) 3.5
321196 Antisense, RP_040617_01_B04, Mouse strain C57BL/6J (56 days, male) 1.5

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