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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:97.4 nTPM
HPA Brain:18.8 nTPM
GTEx:97.4 nTPM
FANTOM5:391.3 Scaled Tags Per Million
Pig:114.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 18.8
2048 Male, age 55, midline 25.9
1981 Female, age 72, midline 19.9
2194 Female, age 79, both hemispheres 17.3
2816 Male, age 47, midline 16.4
2565 Male, age 75, midline 14.4
Cervical spinal cord, dorsal horn
nTPM: 17.1
2296 Male, age 66, both hemispheres 26.1
2173 Female, age 72, unknown 20.5
2069 Male, age 47, both hemispheres 17.2
1877 Male, age 55, unknown 15.1
2297 Male, age 75, both hemispheres 12.3
2721 Male, age 90, both hemispheres 11.3
Cervical spinal cord, ventral horn
nTPM: 18.3
2098 Female, age 72, unknown 24.5
2809 Male, age 90, both hemispheres 20.6
2480 Male, age 75, both hemispheres 18.5
2295 Male, age 66, both hemispheres 17.0
2820 Female, age 79, both hemispheres 16.2
2068 Male, age 55, unknown 13.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 97.4
Samples: 159

Max nTPM: 149.0
Min nTPM: 42.4
Std nTPM: 22.4
Median nTPM: 97.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 149.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 146.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 142.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 140.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 136.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 136.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 135.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 135.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 132.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 130.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 129.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 129.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 127.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 126.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 125.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 124.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 123.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 123.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 123.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 123.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 123.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 122.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 122.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 122.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 122.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 122.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 122.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 121.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 121.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 120.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 117.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 116.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 116.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 116.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 115.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 114.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 114.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 114.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 114.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 113.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 113.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 113.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 112.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 112.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 112.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 111.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 110.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 110.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 110.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 110.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 109.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 109.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 109.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 109.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 108.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 108.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 107.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 107.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 107.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 106.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 106.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 105.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 105.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 105.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 104.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 104.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 103.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 103.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 103.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 101.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 101.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 99.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 99.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 99.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 98.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 98.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 98.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 97.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 97.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 97.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 97.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 96.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 96.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 96.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 95.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 94.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 94.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 94.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 93.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 93.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 92.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 91.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 91.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 91.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 91.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 90.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 90.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 90.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 90.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 90.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 90.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 90.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 89.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 89.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 89.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 89.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 88.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 88.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 86.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 86.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 85.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 85.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 85.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 84.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 84.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 84.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 84.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 83.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 82.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 82.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 81.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 79.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 79.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 79.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 78.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 78.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 77.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 77.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 77.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 76.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 76.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 74.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 73.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 72.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 72.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 72.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 72.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 71.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 70.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 69.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 67.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 66.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 64.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 63.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 63.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 62.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 62.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 62.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 59.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 59.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 58.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 56.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 54.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 53.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 53.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 49.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 45.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 42.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

391.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 391.3
FF:10181-103D1 60 years, female 512.1
FF:10159-103A6 76 years, female 270.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 114.2
Samples: 4

Max nTPM: 131.9
Min nTPM: 101.3
Sample A Female 131.9
Sample B Female 121.9
Sample C Male 101.7
Sample D Male 101.3
Ventral spinal cord
nTPM: 110.7
Samples: 4

Max nTPM: 120.5
Min nTPM: 104.1
Sample A Female 111.8
Sample B Female 106.4
Sample C Male 104.1
Sample D Male 120.5

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