We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NDRG1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • NDRG1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:153.1 nTPM
FANTOM5:197.8 Scaled Tags Per Million
Pig:42.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006881
Glial cells High
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 153.1
Samples: 246

Max nTPM: 408.0
Min nTPM: 25.6
Std nTPM: 68.6
Median nTPM: 147.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 408.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 367.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 355.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 349.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 333.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 330.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 324.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 312.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 312.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 294.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 291.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 290.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 290.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 284.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 282.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 279.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 276.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 274.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 273.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 260.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 256.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 256.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 256.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 254.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 237.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 231.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 229.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 227.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 225.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 225.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 224.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 221.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 219.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 218.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 216.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 216.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 216.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 215.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 214.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 214.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 214.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 213.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 213.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 210.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 210.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 209.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 207.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 205.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 205.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 203.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 202.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 201.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 200.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 199.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 198.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 198.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 196.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 192.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 191.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 191.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 189.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 189.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 188.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 188.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 186.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 186.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 185.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 184.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 184.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 184.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 182.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 181.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 180.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 180.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 180.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 179.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 179.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 178.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 177.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 177.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 175.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 172.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 172.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 172.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 170.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 170.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 169.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 169.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 168.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 167.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 166.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 165.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 164.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 162.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 162.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 162.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 161.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 161.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 160.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 160.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 160.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 158.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 158.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 158.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 158.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 158.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 157.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 156.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 155.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 155.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 154.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 153.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 152.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 152.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 151.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 151.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 150.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 149.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 149.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 149.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 149.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 149.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 147.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 147.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 147.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 147.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 145.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 144.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 142.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 142.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 140.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 139.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 139.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 139.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 139.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 138.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 136.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 136.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 135.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 135.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 134.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 133.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 132.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 130.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 128.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 128.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 128.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 128.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 127.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 127.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 127.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 127.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 126.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 126.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 123.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 123.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 122.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 122.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 120.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 120.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 118.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 118.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 116.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 115.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 115.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 114.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 113.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 111.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 110.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 109.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 109.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 109.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 108.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 108.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 107.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 106.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 105.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 104.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 104.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 104.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 104.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 103.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 102.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 102.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 101.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 101.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 100.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 99.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 98.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 98.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 98.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 98.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 97.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 96.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 95.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 94.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 94.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 94.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 94.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 93.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 92.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 89.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 89.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 88.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 87.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 86.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 85.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 84.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 84.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 83.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 82.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 82.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 80.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 78.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 76.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 75.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 75.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 74.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 73.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 73.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 71.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 70.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 70.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 69.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 68.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 67.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 66.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 66.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 65.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 64.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 62.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 59.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 59.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 58.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 57.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 57.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 56.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 55.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 53.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 53.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 50.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 50.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 49.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 47.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 44.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 25.6
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

197.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 197.8
FF:10164-103B2 76 years, female 197.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.0
Pig sample Sample description nTPM
Caudate
nTPM: 42.0
Samples: 4

Max nTPM: 52.5
Min nTPM: 35.3
Sample A Female 52.5
Sample B Female 38.8
Sample C Male 41.4
Sample D Male 35.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org