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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:457.2 nTPM
HPA Brain:583.0 nTPM
GTEx:457.2 nTPM
FANTOM5:810.7 Scaled Tags Per Million
Pig:340.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

583.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 449.2
2816 Male, age 47, midline 508.0
2565 Male, age 75, midline 462.7
1981 Female, age 72, midline 447.4
2194 Female, age 79, both hemispheres 443.5
2048 Male, age 55, midline 384.4
Cervical spinal cord, dorsal horn
nTPM: 465.4
2296 Male, age 66, both hemispheres 804.3
2173 Female, age 72, unknown 579.4
2069 Male, age 47, both hemispheres 391.2
1877 Male, age 55, unknown 382.9
2721 Male, age 90, both hemispheres 320.6
2297 Male, age 75, both hemispheres 313.8
Cervical spinal cord, ventral horn
nTPM: 583.0
2480 Male, age 75, both hemispheres 702.3
2809 Male, age 90, both hemispheres 586.6
2098 Female, age 72, unknown 584.5
2820 Female, age 79, both hemispheres 576.5
2068 Male, age 55, unknown 556.1
2295 Male, age 66, both hemispheres 492.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

457.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 457.2
Samples: 159

Max nTPM: 911.7
Min nTPM: 106.2
Std nTPM: 157.2
Median nTPM: 433.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 911.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 909.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 903.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 854.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 802.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 773.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 743.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 733.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 731.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 727.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 725.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 723.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 718.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 703.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 694.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 687.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 667.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 658.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 653.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 646.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 646.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 645.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 639.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 636.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 634.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 607.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 600.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 597.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 583.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 581.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 580.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 577.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 571.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 568.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 566.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 564.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 559.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 557.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 555.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 550.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 545.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 541.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 539.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 536.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 531.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 526.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 524.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 524.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 519.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 518.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 514.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 512.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 512.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 511.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 509.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 508.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 507.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 501.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 498.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 496.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 496.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 488.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 477.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 476.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 469.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 469.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 466.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 462.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 461.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 460.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 458.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 457.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 454.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 453.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 450.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 440.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 439.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 435.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 434.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 433.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 433.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 432.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 427.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 423.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 421.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 419.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 419.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 419.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 419.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 416.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 414.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 410.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 410.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 408.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 406.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 405.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 403.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 403.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 399.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 398.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 398.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 397.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 392.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 392.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 391.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 384.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 381.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 380.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 375.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 372.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 371.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 369.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 362.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 361.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 353.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 351.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 347.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 346.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 344.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 339.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 338.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 336.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 335.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 334.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 325.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 325.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 321.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 321.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 319.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 318.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 315.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 314.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 314.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 313.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 310.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 308.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 295.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 293.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 282.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 282.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 268.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 267.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 266.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 251.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 250.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 247.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 246.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 246.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 240.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 236.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 228.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 222.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 221.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 212.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 210.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 205.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 198.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 192.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 106.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

810.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 810.7
FF:10181-103D1 60 years, female 925.7
FF:10159-103A6 76 years, female 695.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

340.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 340.4
Samples: 4

Max nTPM: 415.2
Min nTPM: 282.9
Sample A Female 282.9
Sample B Female 359.6
Sample C Male 415.2
Sample D Male 303.7
Ventral spinal cord
nTPM: 328.8
Samples: 4

Max nTPM: 348.6
Min nTPM: 317.2
Sample A Female 329.0
Sample B Female 320.3
Sample C Male 317.2
Sample D Male 348.6

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