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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:512.2 nTPM
FANTOM5:445.5 Scaled Tags Per Million
Pig:542.0 nTPM
Allen mouse:14.8 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

512.2
Sample id Sample description nTPM
Area postrema
nTPM: 82.4
2054 Male, age 76, both hemispheres 199.8
2306 Male, age 80, both hemispheres 33.3
2799 Male, age 61, both hemispheres 14.1
Dorsal medullary reticular nucleus
nTPM: 297.5
2040 Female, age 85, both hemispheres 524.3
2373 Male, age 61, both hemispheres 202.2
2088 Male, age 76, both hemispheres 165.8
Dorsal motor vagal complex
nTPM: 249.4
2133 Female, age 91, both hemispheres 675.1
2000 Male, age 74, unknown 326.8
2844 Male, age 55, unknown 285.4
2813 Female, age 72, unknown 258.5
2807 Female, age 85, both hemispheres 152.9
2643 Male, age 74, both hemispheres 108.1
2797 Male, age 61, both hemispheres 98.5
2185 Male, age 76, both hemispheres 89.5
Gigantocellular reticular nuclei, medullary
nTPM: 237.8
2462 Male, age 74, both hemispheres 491.9
1876 Female, age 85, both hemispheres 238.9
2310 Male, age 80, both hemispheres 226.7
2022 Male, age 76, right hemisphere 193.2
2387 Female, age 91, both hemispheres 160.8
2314 Male, age 61, both hemispheres 115.2
Gigantocellular reticular nuclei, pars
nTPM: 308.2
2168 Male, age 76, both hemispheres 479.2
2084 Female, age 85, both hemispheres 349.7
2336 Male, age 61, both hemispheres 294.4
2706 Male, age 80, both hemispheres 210.0
2330 Male, age 80, both hemispheres 207.7
Inferior olive
nTPM: 97.9
2085 Female, age 85, both hemispheres 186.1
2628 Female, age 91, both hemispheres 130.7
2178 Male, age 61, both hemispheres 84.1
2379 Male, age 80, both hemispheres 53.0
2563 Male, age 74, both hemispheres 35.9
Lateral medullary reticular nucleus
nTPM: 181.7
2044 Male, age 76, both hemispheres 385.1
2190 Female, age 85, both hemispheres 195.2
2374 Male, age 61, both hemispheres 163.7
2804 Female, age 91, both hemispheres 148.8
2305 Male, age 74, both hemispheres 105.9
2852 Male, age 80, both hemispheres 91.3
Medial olivary nucleus
nTPM: 70.3
2851 Male, age 80, both hemispheres 132.9
1962 Male, age 76, both hemispheres 89.9
2138 Female, age 91, both hemispheres 37.1
1943 Male, age 61, both hemispheres 21.4
Medial vestibular nucleus
nTPM: 369.0
2134 Male, age 76, both hemispheres 544.0
2801 Male, age 74, both hemispheres 398.7
2803 Female, age 91, both hemispheres 346.4
2624 Male, age 61, both hemispheres 340.4
2743 Female, age 85, both hemispheres 295.4
2093 Male, age 80, both hemispheres 289.3
Motor hypoglossal nucleus
nTPM: 367.5
2461 Male, age 61, both hemispheres 620.7
2132 Female, age 85, both hemispheres 395.0
2125 Female, age 91, both hemispheres 386.1
2182 Male, age 80, both hemispheres 227.5
2277 Male, age 76, both hemispheres 208.2
Nucleus ambiguus
nTPM: 189.4
2096 Female, age 85, both hemispheres 286.2
2071 Male, age 76, both hemispheres 92.6
Nucleus cuneatus
nTPM: 141.0
2131 Male, age 76, both hemispheres 271.6
2100 Male, age 76, both hemispheres 187.8
2562 Male, age 61, both hemispheres 182.8
2376 Male, age 61, both hemispheres 177.4
2381 Male, age 80, both hemispheres 131.0
2564 Male, age 74, both hemispheres 124.1
2808 Female, age 85, both hemispheres 81.7
2805 Female, age 91, both hemispheres 66.6
2380 Male, age 80, both hemispheres 45.9
Nucleus gracilis
nTPM: 58.3
2627 Male, age 74, both hemispheres 78.6
2299 Female, age 85, both hemispheres 52.8
2382 Male, age 80, both hemispheres 43.6
Nucleus raphe obscurus
nTPM: 133.7
2800 Male, age 61, midline 207.3
2845 Female, age 85, midline 165.9
2142 Male, age 76, midline 28.0
Nucleus raphe pallidus
nTPM: 201.9
2183 Male, age 80, midline 393.2
1924 Male, age 61, midline 175.0
2145 Male, age 76, midline 37.4
Nucleus tractus solitarii
nTPM: 323.2
2144 Female, age 91, right hemisphere 596.9
2191 Female, age 85, both hemispheres 286.1
2307 Male, age 80, both hemispheres 215.4
2656 Male, age 76, both hemispheres 194.5
Parvicellular reticular nuclei
nTPM: 301.7
2558 Male, age 74, both hemispheres 313.1
2119 Male, age 80, both hemispheres 305.1
2095 Male, age 76, both hemispheres 286.8
Parvicellular reticular nuclei, medullary
nTPM: 363.4
2189 Female, age 91, both hemispheres 433.7
2091 Female, age 85, both hemispheres 410.1
2181 Male, age 80, left hemisphere 246.6
Peritrigeminal nucleus
nTPM: 293.8
2179 Male, age 61, both hemispheres 341.2
2136 Male, age 76, both hemispheres 289.9
2067 Female, age 85, both hemispheres 250.3
Prepositus hypoglossal nucleus
nTPM: 250.3
2855 Female, age 85, right hemisphere 323.0
2086 Male, age 80, both hemispheres 177.6
Spinal trigeminal nucleus, caudal
nTPM: 312.5
2390 Female, age 91, both hemispheres 750.9
2447 Male, age 76, both hemispheres 261.7
2642 Male, age 74, both hemispheres 223.0
2308 Male, age 80, both hemispheres 174.2
2312 Male, age 61, both hemispheres 152.8
Spinal trigeminal nucleus, interpolar
nTPM: 512.2
2625 Male, age 61, both hemispheres 1064.7
2066 Male, age 76, right hemisphere 547.2
2389 Female, age 91, both hemispheres 383.4
2033 Male, age 80, both hemispheres 306.5
2386 Female, age 85, both hemispheres 259.2
Spinal vestibular nucleus
nTPM: 266.1
2186 Female, age 91, both hemispheres 376.4
2806 Female, age 85, both hemispheres 281.9
2780 Male, age 80, both hemispheres 276.3
2796 Male, age 61, both hemispheres 271.2
2748 Male, age 76, both hemispheres 241.9
2384 Male, age 74, both hemispheres 149.1
Superior vestibular nucleus
nTPM: 185.6
2015 Male, age 80, both hemispheres 231.7
2061 Male, age 76, both hemispheres 181.0
2383 Male, age 74, both hemispheres 144.2
Ventral medullary reticular nucleus
nTPM: 192.6
2060 Male, age 76, both hemispheres 218.7
2372 Male, age 61, both hemispheres 166.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 242.0
2741 Female, age 85, both hemispheres 335.3
1986 Male, age 76, both hemispheres 317.0
2180 Male, age 61, both hemispheres 253.5
2302 Female, age 91, both hemispheres 178.9
2118 Male, age 80, both hemispheres 125.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

445.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 445.5
FF:10038-101F2 18-64 years, mixed 621.8
FF:10174-103C3 60 years, female 378.6
FF:10155-103A2 76 years, female 336.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

542.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 542.1
Samples: 4

Max nTPM: 627.3
Min nTPM: 296.2
Sample A Female 626.7
Sample B Female 618.0
Sample C Male 627.3
Sample D Male 296.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 14.8
74819695 Antisense, RP_060315_02_H11, Mouse strain C57BL/6J (56 days, male) 15.0
69173415 Antisense, RP_050329_01_E10, Mouse strain C57BL/6J (56 days, male) 14.5

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