We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PPP2CB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PPP2CB
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:216.7 nTPM
HPA Brain:173.6 nTPM
GTEx:216.7 nTPM
FANTOM5:142.9 Scaled Tags Per Million
Pig:79.3 nTPM
Mouse:140.5 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.6
Sample id Sample description nTPM
Amygdala
nTPM: 173.6
2695 Female, age 67, right hemisphere 189.2
2514 Male, age 75, right hemisphere 181.2
2814 Male, age 76, right hemisphere 180.9
1987 Female, age 91, left hemisphere 162.3
2517 Female, age 94, left hemisphere 154.5
Basal amygdala
nTPM: 145.0
2609 Male, age 75, right hemisphere 199.9
1955 Male, age 76, both hemispheres 143.9
2110 Male, age 80, left hemisphere 139.1
2827 Female, age 67, right hemisphere 135.9
2685 Female, age 94, left hemisphere 130.5
2243 Female, age 91, right hemisphere 120.9
Central amygdala
nTPM: 157.6
2515 Male, age 75, right hemisphere 182.4
2826 Female, age 94, left hemisphere 181.4
1905 Male, age 76, both hemispheres 175.0
2239 Male, age 80, left hemisphere 132.2
2701 Female, age 91, right hemisphere 117.2
Corticomedial amygdala
nTPM: 141.0
2428 Male, age 75, right hemisphere 202.8
2829 Male, age 80, left hemisphere 150.4
2240 Male, age 76, both hemispheres 125.9
2429 Female, age 94, left hemisphere 125.4
2242 Female, age 91, right hemisphere 124.3
2535 Female, age 67, right hemisphere 117.5
Lateral amygdala
nTPM: 151.7
2516 Male, age 75, right hemisphere 199.1
2830 Female, age 67, right hemisphere 176.9
1883 Male, age 76, both hemispheres 154.7
2534 Female, age 94, left hemisphere 140.4
2256 Male, age 80, left hemisphere 134.7
2255 Female, age 91, right hemisphere 104.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 216.7
Samples: 152

Max nTPM: 484.5
Min nTPM: 70.3
Std nTPM: 58.1
Median nTPM: 206.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 484.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 426.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 395.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 394.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 386.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 331.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 325.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 318.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 293.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 291.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 287.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 286.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 285.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 281.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 281.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 280.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 279.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 279.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 277.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 273.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 271.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 269.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 267.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 266.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 265.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 260.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 258.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 258.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 258.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 257.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 256.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 255.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 254.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 254.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 254.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 253.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 253.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 251.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 250.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 248.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 243.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 240.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 240.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 239.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 238.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 234.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 230.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 229.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 229.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 225.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 225.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 225.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 225.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 225.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 223.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 223.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 222.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 222.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 220.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 219.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 218.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 217.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 216.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 215.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 214.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 212.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 212.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 212.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 210.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 210.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 210.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 209.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 208.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 208.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 207.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 206.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 206.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 205.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 205.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 205.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 204.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 204.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 204.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 204.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 203.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 203.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 199.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 199.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 199.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 198.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 198.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 197.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 196.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 195.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 195.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 191.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 190.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 189.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 188.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 187.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 187.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 187.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 187.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 185.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 182.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 182.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 181.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 181.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 181.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 181.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 178.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 178.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 178.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 178.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 177.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 177.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 175.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 175.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 175.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 174.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 174.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 174.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 173.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 172.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 172.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 172.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 172.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 171.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 171.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 170.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 167.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 167.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 166.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 165.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 163.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 161.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 158.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 157.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 156.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 156.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 155.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 154.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 153.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 152.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 149.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 146.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 142.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 139.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 126.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 122.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 88.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 70.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 142.9
FF:10151-102I7 76 years, female 142.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.3
Pig sample Sample description nTPM
Amygdala
nTPM: 79.3
Samples: 4

Max nTPM: 95.7
Min nTPM: 66.6
Sample A Female 95.7
Sample B Female 79.3
Sample C Male 66.6
Sample D Male 75.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 140.5
Samples: 4

Max nTPM: 144.1
Min nTPM: 136.4
Sample A Male 144.1
Sample B Male 141.8
Sample C Female 139.8
Sample D Female 136.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org