MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.2 nTPM
HPA Brain:65.4 nTPM
GTEx:65.2 nTPM
FANTOM5:223.9 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:38.2 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 65.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.6
2019 Male, age 18, unknown 57.4
2411 Female, age 72, unknown 56.3
2666 Male, age 74, left hemisphere 48.8
1833 Male, age 53, unknown 46.7
1870 Female, age 42, unknown 46.7
2828 Female, age 72, unknown 43.9
2586 Male, age 75, left hemisphere 41.2
1830 Male, age 51, unknown 40.8
1827 Male, age 72, unknown 38.3
2219 Male, age 76, both hemispheres 35.7
Dorsal raphe nucleus
nTPM: 58.2
2298 Female, age 72, unknown 71.9
1828 Male, age 53, unknown 59.5
2047 Male, age 72, unknown 59.5
2750 Male, age 76, both hemispheres 51.4
2016 Female, age 72, unknown 48.9
Inferior colliculus
nTPM: 45.5
2097 Female, age 72, unknown 58.2
1890 Male, age 53, unknown 47.5
1848 Female, age 42, unknown 42.1
2849 Male, age 72, unknown 34.4
Median raphe nucleus
nTPM: 63.8
2220 Male, age 76, midline 63.8
Periaquaductal grey, anterior
nTPM: 46.8
2502 Female, age 75, unknown 53.0
1795 Male, age 51, unknown 43.8
1947 Male, age 18, unknown 43.7
Periaquaductal grey, dorsal
nTPM: 45.8
2850 Male, age 76, both hemispheres 49.0
1831 Male, age 72, unknown 46.1
1840 Male, age 53, unknown 45.7
2464 Female, age 72, unknown 42.4
Periaquaductal grey, lateral
nTPM: 42.9
2272 Male, age 74, both hemispheres 47.3
2140 Male, age 76, both hemispheres 43.6
2053 Male, age 18, unknown 37.7
Pretectal area
nTPM: 52.8
1944 Female, age 72, unknown 69.2
1816 Male, age 51, unknown 67.2
1817 Female, age 42, unknown 64.5
2007 Male, age 72, unknown 62.8
1815 Male, age 53, unknown 56.1
2273 Male, age 74, both hemispheres 55.6
2224 Female, age 72, unknown 53.7
2667 Female, age 75, unknown 40.3
2316 Male, age 76, right hemisphere 40.1
2407 Male, age 75, both hemispheres 36.0
2825 Male, age 18, unknown 35.5
Red nucleus
nTPM: 48.2
2503 Female, age 72, unknown 59.9
1821 Female, age 72, unknown 59.6
1904 Male, age 53, unknown 52.8
2785 Male, age 18, unknown 50.9
2584 Male, age 75, left hemisphere 50.1
1954 Female, age 42, unknown 48.5
2725 Female, age 75, unknown 46.9
2823 Male, age 76, right hemisphere 45.4
2227 Male, age 72, unknown 44.5
1865 Male, age 51, unknown 43.3
2769 Male, age 72, unknown 41.8
2588 Male, age 74, left hemisphere 35.2
Substantia nigra
nTPM: 65.4
2241 Male, age 72, unknown 94.0
1916 Female, age 42, unknown 90.5
1851 Male, age 51, unknown 75.3
1889 Female, age 72, unknown 66.6
2590 Female, age 75, unknown 62.9
1941 Male, age 53, unknown 60.9
2699 Male, age 18, unknown 60.4
2665 Male, age 74, both hemispheres 50.4
2409 Female, age 72, unknown 48.1
2583 Male, age 75, right hemisphere 45.1
Superior colliculus
nTPM: 46.7
2261 Male, age 18, unknown 61.7
2087 Female, age 72, unknown 55.4
1913 Female, age 42, unknown 54.4
2668 Female, age 75, unknown 52.6
2587 Male, age 74, left hemisphere 52.5
1995 Male, age 72, unknown 45.5
1796 Male, age 53, unknown 40.9
1839 Male, age 51, unknown 39.5
1895 Male, age 76, right hemisphere 35.7
2664 Male, age 75, both hemispheres 28.7
Ventral tegmental area
nTPM: 60.3
2410 Female, age 72, unknown 72.8
1915 Female, age 42, unknown 65.7
2218 Male, age 76, both hemispheres 60.0
1942 Male, age 51, unknown 57.8
2223 Female, age 72, unknown 54.4
2021 Male, age 53, unknown 50.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.2
Samples: 139

Max nTPM: 121.4
Min nTPM: 27.8
Std nTPM: 21.0
Median nTPM: 62.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 121.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 118.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 118.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 111.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 110.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 110.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 108.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 103.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 103.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 102.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 96.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 223.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 223.9
FF:10158-103A5 76 years, female 223.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 30.9
Min nTPM: 18.3
Sample A Female 30.9
Sample B Female 29.3
Sample C Male 26.4
Sample D Male 18.3
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 30.3
Min nTPM: 16.5
Sample A Female 30.3
Sample B Female 21.9
Sample C Male 19.8
Sample D Male 16.5
Periaqueductal gray
nTPM: 18.0
Samples: 3

Max nTPM: 18.9
Min nTPM: 16.4
Sample B Female 18.8
Sample C Male 18.9
Sample D Male 16.4
Superior colliculi
nTPM: 27.1
Samples: 4

Max nTPM: 49.3
Min nTPM: 16.2
Sample A Female 23.5
Sample B Female 49.3
Sample C Male 19.5
Sample D Male 16.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 42.2
Min nTPM: 36.2
Sample A Male 36.2
Sample B Male 42.2
Sample C Female 36.4
Sample D Female 38.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
413772 Antisense, RP_040809_01_C03, Mouse strain C57BL/6J (56 days, male) 7.7
81600104 Antisense, RP_080205_01_F05, Mouse strain C57BL/6J (56 days, male) 3.9

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