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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1011.2 nTPM
FANTOM5:1096.2 Scaled Tags Per Million
Pig:1912.8 nTPM
Mouse:824.8 nTPM
Allen mouse:0.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1011.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 596.7
2032 Female, age 42, unknown 640.8
2396 Male, age 61, right hemisphere 594.4
2497 Male, age 66, unknown 555.0
Centromedial thalamic nucleus
nTPM: 1006.4
2279 Female, age 85, left hemisphere 1332.1
2401 Male, age 76, right hemisphere 680.7
Habenula
nTPM: 465.8
2203 Male, age 61, left hemisphere 691.4
1957 Male, age 80, both hemispheres 461.5
2252 Male, age 62, unknown 381.1
2276 Male, age 66, unknown 329.3
Lateral geniculate body
nTPM: 710.5
2841 Male, age 80, both hemispheres 879.2
2106 Female, age 67, right hemisphere 849.6
2399 Male, age 61, left hemisphere 765.4
2575 Female, age 94, right hemisphere 729.0
1953 Male, age 62, unknown 709.3
2035 Female, age 72, unknown 704.9
2659 Male, age 66, unknown 632.3
2857 Male, age 74, right hemisphere 414.6
Lateral thalamic nuclei
nTPM: 630.3
2765 Female, age 67, both hemispheres 1077.6
2573 Female, age 94, left hemisphere 609.1
2661 Female, age 72, unknown 515.4
2577 Male, age 74, both hemispheres 479.7
1903 Male, age 76, left hemisphere 469.5
Medial dorsal thalamic nucleus
nTPM: 511.9
2660 Female, age 72, unknown 774.4
1859 Male, age 76, both hemispheres 631.6
1971 Male, age 61, right hemisphere 575.2
1810 Male, age 48, unknown 573.8
2576 Male, age 74, both hemispheres 544.5
2283 Male, age 80, right hemisphere 523.9
1930 Female, age 42, unknown 505.7
2026 Male, age 62, unknown 490.8
2498 Male, age 66, unknown 469.8
2039 Female, age 72, unknown 433.6
2492 Male, age 75, right hemisphere 433.0
2402 Female, age 67, both hemispheres 418.4
2572 Female, age 94, right hemisphere 279.6
Medial geniculate body
nTPM: 558.0
2217 Female, age 72, unknown 672.0
2207 Male, age 80, right hemisphere 645.7
1811 Female, age 42, unknown 579.1
2571 Male, age 75, right hemisphere 573.3
2657 Male, age 74, right hemisphere 565.9
2650 Female, age 94, left hemisphere 460.3
2049 Male, age 76, both hemispheres 409.9
Nucleus reuniens
nTPM: 1011.2
2210 Female, age 85, left hemisphere 1617.7
2205 Male, age 80, left hemisphere 801.7
2212 Female, age 67, left hemisphere 614.0
Nucleus rhomboideus
nTPM: 842.1
2280 Female, age 85, left hemisphere 1532.0
2206 Male, age 80, both hemispheres 526.0
2213 Female, age 67, left hemisphere 468.2
Posterior thalamic nucleus
nTPM: 429.4
2266 Male, age 76, right hemisphere 762.5
2495 Female, age 67, right hemisphere 352.7
2649 Female, age 94, both hemispheres 322.8
2655 Male, age 74, right hemisphere 279.6
Pulvinar
nTPM: 619.3
2398 Male, age 61, left hemisphere 942.0
2214 Male, age 76, right hemisphere 689.1
2724 Male, age 74, right hemisphere 649.2
1972 Male, age 62, unknown 647.4
1932 Male, age 80, right hemisphere 627.0
1899 Female, age 42, unknown 578.6
2582 Female, age 72, unknown 578.1
1929 Male, age 48, unknown 562.2
2499 Male, age 66, unknown 466.4
2496 Female, age 67, right hemisphere 453.3
Subthalamic nucleus
nTPM: 879.7
2282 Male, age 61, both hemispheres 1149.8
2275 Male, age 66, unknown 1108.6
2124 Male, age 62, unknown 1079.0
2056 Female, age 72, unknown 886.5
2658 Male, age 74, both hemispheres 828.5
2216 Male, age 48, unknown 824.4
2779 Female, age 42, unknown 664.5
2406 Female, age 72, unknown 496.4
Ventral posterolateral thalamic nucleus
nTPM: 649.3
2740 Male, age 76, right hemisphere 866.9
2397 Male, age 61, right hemisphere 740.8
2570 Male, age 75, right hemisphere 641.5
2581 Female, age 72, unknown 610.7
2578 Male, age 74, both hemispheres 540.7
2197 Male, age 80, both hemispheres 495.2
Ventral posteromedial thalamic nucleus
nTPM: 630.2
2202 Male, age 61, left hemisphere 806.5
2281 Male, age 75, right hemisphere 747.3
2127 Male, age 76, right hemisphere 638.2
2758 Male, age 80, both hemispheres 500.8
2653 Male, age 74, both hemispheres 458.4
Ventral thalamic nuclei
nTPM: 688.3
2652 Male, age 74, left hemisphere 779.6
2291 Female, age 72, unknown 755.4
1860 Male, age 76, both hemispheres 736.7
2580 Male, age 66, unknown 729.1
2858 Female, age 72, unknown 718.1
1845 Male, age 48, unknown 663.5
2285 Male, age 62, unknown 625.7
2204 Male, age 80, both hemispheres 602.4
1912 Female, age 42, unknown 584.0
Zona incerta
nTPM: 772.8
2215 Male, age 66, unknown 1131.2
2822 Male, age 74, right hemisphere 883.3
2403 Male, age 62, unknown 719.1
2663 Female, age 72, unknown 632.4
2208 Male, age 80, right hemisphere 497.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1096.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1096.2
FF:10154-103A1 76 years, female 1096.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1912.8
Pig sample Sample description nTPM
Thalamus
nTPM: 1912.8
Samples: 4

Max nTPM: 3477.9
Min nTPM: 1317.2
Sample A Female 1504.0
Sample B Female 1317.2
Sample C Male 1352.1
Sample D Male 3477.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

824.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 824.8
Samples: 4

Max nTPM: 873.0
Min nTPM: 790.3
Sample A Male 790.3
Sample B Male 873.0
Sample C Female 802.0
Sample D Female 834.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.6
1081 Antisense, RP_Baylor_103091, Mouse strain C57BL/6J (56 days, male) 1.3
1082 Antisense, RP_Baylor_103091, Mouse strain C57BL/6J (56 days, male) 0.9
1083 Sense, RPS_Baylor_37062, Mouse strain C57BL/6J (56 days, male) 0.0

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