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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:355.5 nTPM
FANTOM5:499.2 Scaled Tags Per Million
Pig:512.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043640Antibody HPA046280Antibody CAB010768
Glial cells Not detectedLowMedium
Neuronal cells Not detectedLowMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

355.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 355.5
Samples: 246

Max nTPM: 828.1
Min nTPM: 86.3
Std nTPM: 148.1
Median nTPM: 346.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 828.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 711.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 708.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 695.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 683.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 668.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 662.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 657.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 651.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 636.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 633.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 622.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 621.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 604.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 593.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 591.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 590.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 582.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 581.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 581.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 581.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 579.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 570.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 561.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 561.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 554.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 549.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 547.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 545.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 545.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 544.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 532.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 527.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 524.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 520.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 519.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 517.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 509.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 506.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 504.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 503.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 499.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 496.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 496.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 493.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 493.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 486.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 485.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 482.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 480.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 478.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 477.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 471.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 471.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 470.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 468.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 465.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 460.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 458.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 453.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 451.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 450.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 450.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 450.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 449.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 448.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 446.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 445.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 442.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 442.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 439.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 436.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 435.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 434.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 433.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 431.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 424.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 417.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 414.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 412.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 411.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 410.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 408.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 407.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 406.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 404.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 404.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 404.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 403.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 403.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 401.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 401.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 398.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 396.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 395.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 391.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 389.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 387.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 386.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 385.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 385.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 380.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 380.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 378.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 376.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 374.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 373.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 372.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 370.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 370.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 368.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 368.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 367.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 364.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 362.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 362.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 361.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 360.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 354.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 354.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 352.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 350.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 348.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 345.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 344.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 344.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 343.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 342.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 341.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 340.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 340.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 337.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 333.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 333.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 333.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 332.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 331.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 330.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 327.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 327.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 324.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 321.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 319.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 317.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 316.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 316.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 314.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 314.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 312.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 309.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 307.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 306.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 301.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 300.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 294.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 292.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 291.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 290.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 288.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 286.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 286.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 282.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 282.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 282.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 281.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 280.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 280.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 276.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 274.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 271.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 269.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 266.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 264.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 261.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 260.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 259.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 258.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 253.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 251.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 249.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 246.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 245.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 244.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 243.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 243.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 243.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 240.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 239.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 237.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 236.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 236.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 233.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 226.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 224.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 220.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 216.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 214.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 213.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 213.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 208.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 207.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 207.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 207.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 206.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 206.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 205.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 205.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 202.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 200.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 198.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 191.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 189.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 188.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 187.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 184.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 183.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 178.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 177.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 172.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 171.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 168.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 165.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 162.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 155.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 154.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 145.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 140.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 137.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 134.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 133.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 131.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 130.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 127.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 120.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 116.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 111.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 108.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 107.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 105.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 102.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 101.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 101.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 97.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 87.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 86.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 86.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

499.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 499.2
FF:10164-103B2 76 years, female 499.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

512.6
Pig sample Sample description nTPM
Caudate
nTPM: 512.6
Samples: 4

Max nTPM: 540.5
Min nTPM: 468.8
Sample A Female 540.0
Sample B Female 500.9
Sample C Male 540.5
Sample D Male 468.8

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