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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:729.0 nTPM
HPA Brain:697.2 nTPM
GTEx:729.0 nTPM
FANTOM5:827.5 Scaled Tags Per Million
Pig:2474.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

697.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 599.1
2194 Female, age 79, both hemispheres 747.9
2816 Male, age 47, midline 644.0
1981 Female, age 72, midline 618.0
2565 Male, age 75, midline 530.1
2048 Male, age 55, midline 455.7
Cervical spinal cord, dorsal horn
nTPM: 697.2
2296 Male, age 66, both hemispheres 1169.2
2173 Female, age 72, unknown 815.2
2069 Male, age 47, both hemispheres 632.8
1877 Male, age 55, unknown 574.3
2297 Male, age 75, both hemispheres 539.0
2721 Male, age 90, both hemispheres 452.8
Cervical spinal cord, ventral horn
nTPM: 668.1
2068 Male, age 55, unknown 890.0
2820 Female, age 79, both hemispheres 873.7
2480 Male, age 75, both hemispheres 694.4
2295 Male, age 66, both hemispheres 541.0
2809 Male, age 90, both hemispheres 519.5
2098 Female, age 72, unknown 489.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

729.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 729.0
Samples: 159

Max nTPM: 2005.0
Min nTPM: 186.2
Std nTPM: 285.2
Median nTPM: 687.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2005.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1770.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1575.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1509.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1420.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1334.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1243.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1236.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1212.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1199.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1190.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1148.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1082.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1059.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1052.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1051.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1046.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1043.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1042.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1035.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1020.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1010.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1002.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 986.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 974.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 965.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 962.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 952.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 951.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 934.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 934.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 930.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 926.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 909.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 903.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 901.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 888.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 884.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 884.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 881.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 865.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 862.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 858.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 857.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 854.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 854.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 851.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 850.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 847.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 842.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 839.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 834.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 831.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 805.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 799.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 793.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 793.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 793.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 791.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 780.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 768.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 766.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 754.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 747.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 732.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 729.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 729.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 726.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 720.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 718.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 718.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 716.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 712.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 707.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 707.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 698.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 698.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 695.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 689.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 687.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 685.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 678.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 671.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 671.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 669.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 666.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 659.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 656.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 652.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 650.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 641.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 636.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 634.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 632.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 629.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 626.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 625.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 608.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 605.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 604.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 594.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 594.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 594.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 591.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 590.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 588.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 587.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 584.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 583.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 583.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 566.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 562.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 562.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 559.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 557.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 553.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 553.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 549.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 547.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 539.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 532.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 530.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 527.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 526.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 511.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 508.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 500.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 499.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 496.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 496.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 495.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 494.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 493.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 483.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 481.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 473.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 472.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 468.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 459.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 458.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 452.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 448.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 438.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 433.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 425.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 417.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 417.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 414.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 369.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 341.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 336.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 320.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 297.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 293.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 291.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 240.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 227.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 202.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 186.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

827.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 827.5
FF:10181-103D1 60 years, female 947.4
FF:10159-103A6 76 years, female 707.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2474.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2026.7
Samples: 4

Max nTPM: 2344.4
Min nTPM: 1573.6
Sample A Female 2123.1
Sample B Female 2065.7
Sample C Male 1573.6
Sample D Male 2344.4
Ventral spinal cord
nTPM: 2474.9
Samples: 4

Max nTPM: 3009.5
Min nTPM: 1947.8
Sample A Female 3009.5
Sample B Female 1947.8
Sample C Male 2116.0
Sample D Male 2826.2

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