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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:74.5 nTPM
HPA Brain:34.3 nTPM
GTEx:74.5 nTPM
FANTOM5:378.9 Scaled Tags Per Million
Pig:112.4 nTPM
Mouse:47.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.3
Sample id Sample description nTPM
Amygdala
nTPM: 26.6
2695 Female, age 67, right hemisphere 31.4
2814 Male, age 76, right hemisphere 27.0
2514 Male, age 75, right hemisphere 25.0
1987 Female, age 91, left hemisphere 24.8
2517 Female, age 94, left hemisphere 24.8
Basal amygdala
nTPM: 31.5
2243 Female, age 91, right hemisphere 38.2
2827 Female, age 67, right hemisphere 34.1
2685 Female, age 94, left hemisphere 32.0
2609 Male, age 75, right hemisphere 30.8
2110 Male, age 80, left hemisphere 27.8
1955 Male, age 76, both hemispheres 26.3
Central amygdala
nTPM: 27.4
2239 Male, age 80, left hemisphere 31.2
2701 Female, age 91, right hemisphere 30.0
2826 Female, age 94, left hemisphere 29.7
1905 Male, age 76, both hemispheres 23.8
2515 Male, age 75, right hemisphere 22.2
Corticomedial amygdala
nTPM: 34.3
2535 Female, age 67, right hemisphere 62.7
2242 Female, age 91, right hemisphere 34.5
2240 Male, age 76, both hemispheres 33.5
2429 Female, age 94, left hemisphere 31.4
2829 Male, age 80, left hemisphere 22.9
2428 Male, age 75, right hemisphere 20.6
Lateral amygdala
nTPM: 27.8
2534 Female, age 94, left hemisphere 36.6
2830 Female, age 67, right hemisphere 28.7
1883 Male, age 76, both hemispheres 27.6
2256 Male, age 80, left hemisphere 26.3
2255 Female, age 91, right hemisphere 25.8
2516 Male, age 75, right hemisphere 21.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.5
Samples: 152

Max nTPM: 141.4
Min nTPM: 15.6
Std nTPM: 20.5
Median nTPM: 76.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 141.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 130.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 114.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 110.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 110.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 109.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 109.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 105.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 103.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 103.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 102.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 99.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 99.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 99.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 97.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 97.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 97.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 96.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 94.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 93.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 93.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 93.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 93.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 92.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 92.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 91.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 91.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 91.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 90.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 90.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 90.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 90.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 89.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 89.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 89.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 89.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 88.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 87.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 86.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 86.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 86.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 85.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 85.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 85.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 84.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 84.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 83.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 83.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 83.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 83.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 82.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 82.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 82.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 81.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 81.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 81.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 81.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 80.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 80.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 80.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 80.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 79.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 79.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 79.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 79.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 79.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 78.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 78.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 78.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 78.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 77.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 76.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 76.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 76.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 76.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 76.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 75.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 75.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 74.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 74.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 74.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 73.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 73.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 73.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 73.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 73.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 72.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 72.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 72.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 72.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 72.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 71.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 69.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 69.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 67.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 67.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 67.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 66.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 66.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 66.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 65.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 65.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 64.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 63.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 63.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 63.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 63.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 62.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 62.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 61.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 61.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 60.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 60.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 60.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 60.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 59.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 58.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 56.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 55.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 55.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 55.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 54.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 54.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 52.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 52.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 51.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 51.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 50.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 50.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 49.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 48.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 47.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 46.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 45.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 45.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 43.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 42.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 41.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 41.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 41.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 40.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 37.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 34.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 32.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 31.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 28.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 26.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 15.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

378.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 378.9
FF:10151-102I7 76 years, female 378.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.4
Pig sample Sample description nTPM
Amygdala
nTPM: 112.5
Samples: 4

Max nTPM: 123.9
Min nTPM: 101.7
Sample A Female 101.7
Sample B Female 123.9
Sample C Male 108.6
Sample D Male 115.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 47.4
Samples: 4

Max nTPM: 51.0
Min nTPM: 42.2
Sample A Male 46.6
Sample B Male 49.6
Sample C Female 51.0
Sample D Female 42.2

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