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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:291.0 nTPM
HPA:291.0 nTPM
GTEx:226.6 nTPM
FANTOM5:449.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA012122Antibody HPA015130
Glandular cells MediumNot detected




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

291.0
overview
Male, age 65
Small intestine sample 232
nTPM: 338.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 328
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 255.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 242.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 226.6
Samples: 187

Max nTPM: 713.4
Min nTPM: 67.9
Std nTPM: 121.4
Median nTPM: 193.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 713.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 574.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 530.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 525.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 504.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 490.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 481.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 480.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 480.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 479.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 459.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 445.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 440.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 437.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 429.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 426.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 424.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 413.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 405.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 404.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 398.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 383.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 382.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 375.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 374.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 372.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 370.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 354.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 351.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 348.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 342.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 341.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 341.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 336.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 334.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 333.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 328.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 327.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 325.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 321.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 318.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 317.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 313.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 309.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 309.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 309.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 304.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 301.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 300.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 297.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 296.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 296.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 294.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 290.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 288.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 288.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 284.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 281.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 275.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 272.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 272.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 267.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 266.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 264.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 264.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 264.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 257.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 254.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 253.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 252.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 243.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 235.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 234.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 230.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 229.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 227.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 226.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 221.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 218.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 218.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 212.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 212.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 211.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 208.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 207.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 205.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 204.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 203.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 202.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 201.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 198.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 197.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 195.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 193.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 193.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 191.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 189.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 188.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 187.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 181.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 180.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 178.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 177.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 174.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 174.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 171.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 166.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 164.2
GTEX-1192X-2526-SM-59868 50-59 years, male 160.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 160.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 159.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 158.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 157.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 156.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 156.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 153.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 152.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 150.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 148.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 146.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 144.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 143.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 143.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 142.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 140.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 140.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 139.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 138.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 137.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 133.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 132.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 132.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 132.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 131.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 130.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 130.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 128.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 128.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 126.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 125.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 124.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 124.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 123.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 122.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 122.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 122.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 121.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 121.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 121.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 119.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 118.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 117.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 117.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 117.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 117.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 117.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 117.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 116.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 113.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 112.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 110.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 109.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 109.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 108.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 106.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 106.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 105.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 104.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 104.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 103.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 103.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 102.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 102.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 102.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 102.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 100.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 100.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 99.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 99.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 87.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 86.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 83.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 81.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 76.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 73.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 72.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 67.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

449.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 449.6
FF:10024-101D6 15,40,85 years, mixed 449.6

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