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SLC17A7
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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

147.416
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:388.9 nTPM
HPA Brain:1006.0 nTPM
GTEx:388.9 nTPM
FANTOM5:372.3 Scaled Tags Per Million
Pig:614.7 nTPM
Mouse:776.9 nTPM
Allen mouse:25.3 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA050458Antibody HPA063679Antibody CAB037183
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA063679
Hippocampal formation mean intensity 147.416
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 110.098
Molecular layer of the dentate gyrus 112.755
Granular dentate gyrus 35.980
CA1 - oriens layer 133.038
CA1 - pyramidal layer 33.077
CA1 - radiatum layer 147.416
CA2 - oriens layer 118.085
CA2 - pyramidal layer 69.363
CA2 - radiatum layer 108.951
CA3 - oriens layer 112.975
CA3 - pyramidal layer 22.926
CA3 - radiatum layer 110.609
Stratum lucidum 90.622
Lacunosum moleculare 61.780
Subiculum 118.818

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1006.0
Sample id Sample description nTPM
Hippocampus
nTPM: 779.0
1898 Male, age 80, left hemisphere 1118.0
2621 Female, age 67, right hemisphere 939.5
2148 Female, age 91, left hemisphere 826.1
1855 Male, age 76, left hemisphere 823.4
1911 Female, age 85, right hemisphere 532.4
2529 Female, age 94, left hemisphere 434.6
Dentate gyrus
nTPM: 747.1
1927 Female, age 91, both hemispheres 1045.3
2530 Female, age 94, left hemisphere 818.5
2010 Male, age 76, both hemispheres 789.1
2531 Female, age 67, both hemispheres 702.2
2246 Female, age 85, both hemispheres 569.0
2528 Male, age 74, both hemispheres 558.6
Entorhinal gyrus
nTPM: 553.6
2764 Male, age 80, right hemisphere 819.3
2613 Female, age 94, left hemisphere 728.7
1938 Female, age 85, left hemisphere 577.0
1787 Male, age 76, left hemisphere 471.4
2686 Male, age 75, right hemisphere 380.0
2117 Female, age 91, right hemisphere 345.0
Hippocampus, CA1
nTPM: 1006.0
2749 Male, age 80, left hemisphere 2058.3
1873 Female, age 85, both hemispheres 795.8
2527 Male, age 74, both hemispheres 779.2
2082 Female, age 91, right hemisphere 729.4
2045 Male, age 76, both hemispheres 667.2
Hippocampus, CA2
nTPM: 757.3
1963 Male, age 80, left hemisphere 1399.0
1892 Male, age 76, both hemispheres 821.2
2113 Female, age 91, right hemisphere 714.2
2249 Male, age 74, both hemispheres 631.1
1940 Female, age 85, left hemisphere 500.3
2437 Female, age 94, left hemisphere 478.1
Hippocampus, CA3
nTPM: 798.5
2137 Male, age 80, left hemisphere 1716.0
2861 Female, age 67, both hemispheres 877.8
2620 Female, age 94, left hemisphere 682.5
1867 Male, age 76, both hemispheres 575.1
2436 Male, age 74, both hemispheres 543.6
1891 Female, age 85, both hemispheres 396.1
Parahippocampal cortex
nTPM: 609.4
2245 Female, age 91, both hemispheres 965.5
2532 Female, age 72, left hemisphere 800.4
1850 Male, age 80, both hemispheres 796.7
1933 Female, age 85, both hemispheres 564.3
1990 Female, age 91, right hemisphere 548.1
2250 Female, age 67, right hemisphere 544.5
2693 Female, age 94, both hemispheres 520.2
2018 Male, age 76, both hemispheres 511.9
2622 Female, age 67, right hemisphere 493.5
2692 Male, age 74, both hemispheres 348.7
Perirhinal gyrus
nTPM: 760.1
1847 Female, age 91, left hemisphere 957.9
1794 Male, age 80, right hemisphere 934.1
2521 Female, age 94, right hemisphere 774.6
1841 Female, age 85, right hemisphere 593.3
2848 Male, age 76, right hemisphere 540.4
Subiculum
nTPM: 468.7
1901 Male, age 80, both hemispheres 768.7
2729 Female, age 91, right hemisphere 533.8
1977 Female, age 85, both hemispheres 492.2
2042 Male, age 76, both hemispheres 403.3
2619 Male, age 74, both hemispheres 323.0
2438 Female, age 94, left hemisphere 291.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 388.9
Samples: 197

Max nTPM: 1330.5
Min nTPM: 3.9
Std nTPM: 264.2
Median nTPM: 360.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1330.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1307.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1065.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1012.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1007.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 907.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 901.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 881.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 869.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 865.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 850.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 849.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 840.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 838.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 837.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 826.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 817.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 805.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 763.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 750.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 745.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 732.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 729.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 724.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 720.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 714.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 690.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 674.5
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 665.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 662.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 641.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 635.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 628.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 628.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 615.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 612.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 606.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 605.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 603.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 600.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 588.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 578.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 578.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 570.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 570.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 564.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 562.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 554.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 549.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 542.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 539.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 535.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 532.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 530.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 527.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 524.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 517.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 515.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 501.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 495.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 493.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 490.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 488.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 488.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 485.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 478.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 478.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 477.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 475.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 469.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 468.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 464.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 456.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 454.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 448.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 447.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 443.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 437.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 433.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 432.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 426.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 418.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 418.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 417.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 414.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 403.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 400.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 397.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 392.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 391.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 388.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 386.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 381.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 378.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 374.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 370.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 366.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 365.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 360.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 355.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 354.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 353.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 351.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 350.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 349.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 348.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 334.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 328.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 327.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 326.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 326.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 324.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 321.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 316.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 309.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 308.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 306.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 300.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 288.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 278.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 278.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 275.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 273.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 268.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 266.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 263.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 261.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 259.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 256.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 252.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 249.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 245.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 238.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 236.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 232.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 231.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 227.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 219.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 218.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 217.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 217.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 213.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 203.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 203.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 199.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 185.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 184.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 173.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 168.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 166.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 159.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 155.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 154.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 152.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 150.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 139.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 139.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 136.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 136.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 135.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 132.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 131.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 125.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 119.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 117.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 116.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 96.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 90.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 87.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 82.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 72.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 72.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 70.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 70.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 68.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 62.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 60.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 59.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 53.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 50.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 46.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 37.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 36.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 33.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 33.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 31.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 30.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 29.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 28.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 26.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 23.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 23.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 22.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 20.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 17.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 4.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 3.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

372.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 372.3
FF:10169-103B7 60 years, female 485.0
FF:10153-102I9 76 years, female 259.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

614.7
Pig sample Sample description nTPM
Subiculum
nTPM: 349.2
Samples: 4

Max nTPM: 441.6
Min nTPM: 294.0
Sample A Female 441.6
Sample B Female 294.0
Sample C Male 346.8
Sample D Male 314.3
Dorsal hippocampus
nTPM: 614.8
Samples: 4

Max nTPM: 874.0
Min nTPM: 394.3
Sample A Female 874.0
Sample B Female 745.8
Sample C Male 394.3
Sample D Male 444.9
Entorhinal cortex
nTPM: 374.5
Samples: 4

Max nTPM: 415.3
Min nTPM: 314.0
Sample A Female 415.3
Sample B Female 314.0
Sample C Male 407.4
Sample D Male 361.2
Ventral hippocampus
nTPM: 561.8
Samples: 4

Max nTPM: 772.3
Min nTPM: 284.3
Sample A Female 624.1
Sample B Female 284.3
Sample C Male 566.6
Sample D Male 772.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

776.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 727.8
Samples: 4

Max nTPM: 942.4
Min nTPM: 613.1
Sample A Male 656.2
Sample B Male 699.4
Sample C Female 613.1
Sample D Female 942.4
Hippocampal formation
nTPM: 776.9
Samples: 4

Max nTPM: 942.1
Min nTPM: 672.6
Sample A Male 692.5
Sample B Male 800.4
Sample C Female 942.1
Sample D Female 672.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 25.3
69014470 Antisense, RP_050310_01_B09, Mouse strain C57BL/6J (56 days, male) 26.3
75081210 Antisense, RP_060412_01_A03, Mouse strain C57BL/6J (56 days, male) 24.3
70436317 Antisense, RP_050310_01_B09, Mouse strain C57BL/6J (56 days, male) 21.4

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