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  • SLC17A7
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

72.818
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:275.0 nTPM
HPA Brain:487.9 nTPM
GTEx:275.0 nTPM
FANTOM5:293.2 Scaled Tags Per Million
Pig:265.6 nTPM
Mouse:753.7 nTPM
Allen mouse:26.9 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA063679
Amygdala mean intensity 72.818
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 40.095
Basal medial amygdaloid nucleus 54.926
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 49.291
Cortical amygdala 72.818
Central amygdala 40.599
Medial amygdaloid nucleus 41.267

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

487.9
Sample id Sample description nTPM
Amygdala
nTPM: 150.0
2517 Female, age 94, left hemisphere 302.1
1987 Female, age 91, left hemisphere 265.4
2514 Male, age 75, right hemisphere 144.4
2814 Male, age 76, right hemisphere 20.6
2695 Female, age 67, right hemisphere 17.6
Basal amygdala
nTPM: 481.0
2243 Female, age 91, right hemisphere 849.4
2110 Male, age 80, left hemisphere 603.2
2685 Female, age 94, left hemisphere 571.9
2827 Female, age 67, right hemisphere 359.3
2609 Male, age 75, right hemisphere 271.8
1955 Male, age 76, both hemispheres 230.2
Central amygdala
nTPM: 181.6
2239 Male, age 80, left hemisphere 478.9
2826 Female, age 94, left hemisphere 356.1
2515 Male, age 75, right hemisphere 59.4
2701 Female, age 91, right hemisphere 12.4
1905 Male, age 76, both hemispheres 1.1
Corticomedial amygdala
nTPM: 487.9
2242 Female, age 91, right hemisphere 838.5
2829 Male, age 80, left hemisphere 742.3
2535 Female, age 67, right hemisphere 463.7
2429 Female, age 94, left hemisphere 430.5
2428 Male, age 75, right hemisphere 235.8
2240 Male, age 76, both hemispheres 216.7
Lateral amygdala
nTPM: 243.6
2534 Female, age 94, left hemisphere 494.6
2256 Male, age 80, left hemisphere 423.2
1883 Male, age 76, both hemispheres 152.4
2830 Female, age 67, right hemisphere 145.3
2255 Female, age 91, right hemisphere 141.7
2516 Male, age 75, right hemisphere 104.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

275.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 275.0
Samples: 152

Max nTPM: 685.3
Min nTPM: 5.3
Std nTPM: 173.9
Median nTPM: 249.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 685.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 685.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 646.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 619.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 612.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 607.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 602.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 593.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 588.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 581.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 569.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 569.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 567.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 559.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 536.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 532.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 522.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 521.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 516.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 513.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 511.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 489.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 489.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 485.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 466.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 460.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 458.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 444.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 444.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 434.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 430.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 427.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 426.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 419.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 417.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 412.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 399.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 394.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 390.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 389.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 384.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 384.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 383.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 377.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 375.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 375.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 374.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 361.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 356.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 354.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 348.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 346.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 344.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 343.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 340.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 323.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 318.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 318.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 317.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 316.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 315.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 314.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 310.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 309.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 308.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 301.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 297.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 295.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 294.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 289.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 287.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 277.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 271.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 271.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 266.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 252.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 245.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 241.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 240.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 235.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 234.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 231.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 226.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 222.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 219.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 215.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 210.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 204.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 196.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 195.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 189.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 189.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 187.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 177.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 174.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 173.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 171.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 171.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 170.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 157.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 153.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 146.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 146.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 145.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 145.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 145.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 143.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 139.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 133.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 130.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 130.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 129.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 127.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 126.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 125.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 123.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 118.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 118.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 118.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 117.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 106.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 103.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 103.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 100.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 97.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 95.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 94.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 93.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 91.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 90.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 89.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 87.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 82.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 78.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 74.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 72.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 71.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 67.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 66.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 55.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 54.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 52.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 45.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 41.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 40.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 37.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 31.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 20.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 14.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 5.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 5.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

293.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 293.2
FF:10151-102I7 76 years, female 293.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

265.6
Pig sample Sample description nTPM
Amygdala
nTPM: 265.6
Samples: 4

Max nTPM: 441.5
Min nTPM: 107.6
Sample A Female 441.5
Sample B Female 107.6
Sample C Male 257.4
Sample D Male 255.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

753.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 753.7
Samples: 4

Max nTPM: 778.0
Min nTPM: 727.5
Sample A Male 778.0
Sample B Male 761.9
Sample C Female 747.2
Sample D Female 727.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.9
69014470 Antisense, RP_050310_01_B09, Mouse strain C57BL/6J (56 days, male) 27.1
75081210 Antisense, RP_060412_01_A03, Mouse strain C57BL/6J (56 days, male) 26.7
70436317 Antisense, RP_050310_01_B09, Mouse strain C57BL/6J (56 days, male) 22.3

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