MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:252.8 nTPM
HPA Brain:117.5 nTPM
GTEx:252.8 nTPM
FANTOM5:310.4 Scaled Tags Per Million
Pig:345.7 nTPM
Mouse:392.8 nTPM
Allen mouse:15.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.4
2586 Male, age 75, left hemisphere 99.6
2019 Male, age 18, unknown 95.3
2666 Male, age 74, left hemisphere 95.0
2219 Male, age 76, both hemispheres 92.7
1827 Male, age 72, unknown 89.9
1870 Female, age 42, unknown 89.6
2411 Female, age 72, unknown 88.4
1833 Male, age 53, unknown 69.5
2828 Female, age 72, unknown 66.9
1830 Male, age 51, unknown 66.8
Dorsal raphe nucleus
nTPM: 89.3
2298 Female, age 72, unknown 107.5
2047 Male, age 72, unknown 93.8
1828 Male, age 53, unknown 88.5
2750 Male, age 76, both hemispheres 84.5
2016 Female, age 72, unknown 72.2
Inferior colliculus
nTPM: 83.2
2097 Female, age 72, unknown 103.1
1890 Male, age 53, unknown 80.0
1848 Female, age 42, unknown 78.4
2849 Male, age 72, unknown 71.4
Median raphe nucleus
nTPM: 95.1
2220 Male, age 76, midline 95.1
Periaquaductal grey, anterior
nTPM: 96.6
2502 Female, age 75, unknown 97.7
1947 Male, age 18, unknown 96.8
1795 Male, age 51, unknown 95.2
Periaquaductal grey, dorsal
nTPM: 84.4
1840 Male, age 53, unknown 100.1
1831 Male, age 72, unknown 82.5
2464 Female, age 72, unknown 77.6
2850 Male, age 76, both hemispheres 77.3
Periaquaductal grey, lateral
nTPM: 66.5
2272 Male, age 74, both hemispheres 74.6
2053 Male, age 18, unknown 73.5
2140 Male, age 76, both hemispheres 51.3
Pretectal area
nTPM: 92.6
1816 Male, age 51, unknown 124.4
1944 Female, age 72, unknown 120.1
2007 Male, age 72, unknown 118.2
1817 Female, age 42, unknown 103.9
2667 Female, age 75, unknown 95.8
1815 Male, age 53, unknown 91.4
2224 Female, age 72, unknown 90.7
2407 Male, age 75, both hemispheres 72.2
2273 Male, age 74, both hemispheres 68.9
2316 Male, age 76, right hemisphere 66.7
2825 Male, age 18, unknown 66.4
Red nucleus
nTPM: 75.3
1821 Female, age 72, unknown 100.0
2785 Male, age 18, unknown 86.1
1954 Female, age 42, unknown 82.5
2725 Female, age 75, unknown 82.1
1904 Male, age 53, unknown 79.6
2584 Male, age 75, left hemisphere 73.0
2769 Male, age 72, unknown 69.7
2227 Male, age 72, unknown 68.9
2503 Female, age 72, unknown 68.4
2588 Male, age 74, left hemisphere 67.0
2823 Male, age 76, right hemisphere 63.9
1865 Male, age 51, unknown 62.8
Substantia nigra
nTPM: 117.5
1916 Female, age 42, unknown 151.1
1851 Male, age 51, unknown 136.3
1941 Male, age 53, unknown 128.2
1889 Female, age 72, unknown 125.4
2241 Male, age 72, unknown 121.4
2665 Male, age 74, both hemispheres 119.9
2699 Male, age 18, unknown 109.4
2409 Female, age 72, unknown 107.5
2583 Male, age 75, right hemisphere 95.0
2590 Female, age 75, unknown 80.7
Superior colliculus
nTPM: 85.9
2668 Female, age 75, unknown 103.6
2087 Female, age 72, unknown 98.0
2664 Male, age 75, both hemispheres 97.7
1895 Male, age 76, right hemisphere 87.9
1796 Male, age 53, unknown 84.1
2261 Male, age 18, unknown 84.0
2587 Male, age 74, left hemisphere 78.3
1839 Male, age 51, unknown 76.3
1995 Male, age 72, unknown 75.0
1913 Female, age 42, unknown 73.9
Ventral tegmental area
nTPM: 97.5
1915 Female, age 42, unknown 109.2
2410 Female, age 72, unknown 108.3
1942 Male, age 51, unknown 101.7
2218 Male, age 76, both hemispheres 96.4
2021 Male, age 53, unknown 86.5
2223 Female, age 72, unknown 83.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 252.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 252.8
Samples: 139

Max nTPM: 456.6
Min nTPM: 105.6
Std nTPM: 71.6
Median nTPM: 242.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 456.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 439.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 439.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 433.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 431.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 411.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 407.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 386.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 384.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 383.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 382.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 310.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 310.4
FF:10158-103A5 76 years, female 310.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 345.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 340.1
Samples: 4

Max nTPM: 475.6
Min nTPM: 222.9
Sample A Female 475.6
Sample B Female 314.2
Sample C Male 347.6
Sample D Male 222.9
Midbrain
nTPM: 335.3
Samples: 4

Max nTPM: 415.9
Min nTPM: 300.6
Sample A Female 415.9
Sample B Female 306.3
Sample C Male 318.2
Sample D Male 300.6
Periaqueductal gray
nTPM: 254.0
Samples: 3

Max nTPM: 289.6
Min nTPM: 221.2
Sample B Female 251.1
Sample C Male 289.6
Sample D Male 221.2
Superior colliculi
nTPM: 345.7
Samples: 4

Max nTPM: 423.1
Min nTPM: 283.1
Sample A Female 423.1
Sample B Female 352.1
Sample C Male 324.6
Sample D Male 283.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 392.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 392.8
Samples: 4

Max nTPM: 468.2
Min nTPM: 330.4
Sample A Male 468.2
Sample B Male 364.2
Sample C Female 330.4
Sample D Female 408.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.1
69782533 Antisense, RP_050505_03_B12, Mouse strain C57BL/6J (56 days, male) 15.1

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