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SLC1A6
HPA
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  • SLC1A6
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC1A6
Synonyms EAAT4
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 1 member 6
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband p13.12
Chromosome location (bp) 14950033 - 15022990
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000105143 (version 109)
Entrez gene 6511
HGNC HGNC:10944
UniProt P48664 (UniProt - Evidence at protein level)
neXtProt NX_P48664
GeneCards SLC1A6
Antibodypedia SLC1A6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Sodium-dependent, high-affinity amino acid transporter that mediates the uptake of L-glutamate and also L-aspartate and D-aspartate 1, 2. Functions as a symporter that transports one amino acid molecule together with two or three Na(+) ions and one proton, in parallel with the counter-transport of one K(+) ion. Mediates Cl(-) flux that is not coupled to amino acid transport; this avoids the accumulation of negative charges due to aspartate and Na(+) symport 3. Plays a redundant role in the rapid removal of released glutamate from the synaptic cleft, which is essential for terminating the postsynaptic action of glutamate (Probable).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Amino-acid transport, Symport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Chloride, Metal-binding, Potassium, Sodium
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable high-affinity glutamate transmembrane transporter activity. Involved in neurotransmitter uptake. Located in intermediate filament cytoskeleton and plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC1A6-201
ENSP00000221742
ENST00000221742
P48664
[Direct mapping] Excitatory amino acid transporter 4
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0001504 [neurotransmitter uptake]
GO:0005313 [L-glutamate transmembrane transporter activity]
GO:0005314 [high-affinity L-glutamate transmembrane transporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006836 [neurotransmitter transport]
GO:0006865 [amino acid transport]
GO:0007268 [chemical synaptic transmission]
GO:0008324 [cation transmembrane transporter activity]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0015175 [neutral amino acid transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015183 [L-aspartate transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015501 [glutamate:sodium symporter activity]
GO:0015804 [neutral amino acid transport]
GO:0015810 [aspartate transmembrane transport]
GO:0015813 [L-glutamate transmembrane transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0098655 [cation transmembrane transport]
GO:0098712 [L-glutamate import across plasma membrane]
GO:0098796 [membrane protein complex]
GO:0140009 [L-aspartate import across plasma membrane]
Show all
564 aa
61.6 kDa
No 9
SLC1A6-202
ENSP00000409386
ENST00000430939
E7EV13
[Direct mapping] Amino acid transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0008324 [cation transmembrane transporter activity]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015711 [organic anion transport]
GO:0015807 [L-amino acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0045111 [intermediate filament cytoskeleton]
GO:0055085 [transmembrane transport]
GO:0098655 [cation transmembrane transport]
GO:1902475 [L-alpha-amino acid transmembrane transport]
Show all
500 aa
53.1 kDa
No 6
SLC1A6-203
ENSP00000446175
ENST00000544886
P48664
[Direct mapping] Excitatory amino acid transporter 4
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0001504 [neurotransmitter uptake]
GO:0005313 [L-glutamate transmembrane transporter activity]
GO:0005314 [high-affinity L-glutamate transmembrane transporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006836 [neurotransmitter transport]
GO:0006865 [amino acid transport]
GO:0007268 [chemical synaptic transmission]
GO:0008324 [cation transmembrane transporter activity]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0015175 [neutral amino acid transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015183 [L-aspartate transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015501 [glutamate:sodium symporter activity]
GO:0015804 [neutral amino acid transport]
GO:0015810 [aspartate transmembrane transport]
GO:0015813 [L-glutamate transmembrane transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0098655 [cation transmembrane transport]
GO:0098712 [L-glutamate import across plasma membrane]
GO:0098796 [membrane protein complex]
GO:0140009 [L-aspartate import across plasma membrane]
Show all
312 aa
34.8 kDa
No 4
SLC1A6-204
ENSP00000472133
ENST00000594383
P48664
[Direct mapping] Excitatory amino acid transporter 4
Show all
M0R1V3
[Direct mapping] Excitatory amino acid transporter 4
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001504 [neurotransmitter uptake]
GO:0005313 [L-glutamate transmembrane transporter activity]
GO:0005314 [high-affinity L-glutamate transmembrane transporter activity]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006836 [neurotransmitter transport]
GO:0006865 [amino acid transport]
GO:0007268 [chemical synaptic transmission]
GO:0008324 [cation transmembrane transporter activity]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0015175 [neutral amino acid transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015183 [L-aspartate transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015501 [glutamate:sodium symporter activity]
GO:0015804 [neutral amino acid transport]
GO:0015810 [aspartate transmembrane transport]
GO:0015813 [L-glutamate transmembrane transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0042391 [regulation of membrane potential]
GO:0042734 [presynaptic membrane]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0051649 [establishment of localization in cell]
GO:0098655 [cation transmembrane transport]
GO:0098712 [L-glutamate import across plasma membrane]
GO:0098796 [membrane protein complex]
GO:0098978 [glutamatergic synapse]
GO:0140009 [L-aspartate import across plasma membrane]
Show all
564 aa
61.6 kDa
No 9
SLC1A6-205
ENSP00000469551
ENST00000595863
M0QY32
[Direct mapping] Excitatory amino acid transporter 4
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0015293 [symporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0055085 [transmembrane transport]
Show all
110 aa
12.8 kDa
No 2
SLC1A6-207
ENSP00000471562
ENST00000597262
M0R106
[Direct mapping] Amino acid transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0008324 [cation transmembrane transporter activity]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015711 [organic anion transport]
GO:0015807 [L-amino acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0055085 [transmembrane transport]
GO:0098655 [cation transmembrane transport]
GO:1902475 [L-alpha-amino acid transmembrane transport]
Show all
160 aa
18.1 kDa
No 3
SLC1A6-208
ENSP00000471781
ENST00000598504
P48664
[Direct mapping] Excitatory amino acid transporter 4
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0001504 [neurotransmitter uptake]
GO:0005313 [L-glutamate transmembrane transporter activity]
GO:0005314 [high-affinity L-glutamate transmembrane transporter activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006836 [neurotransmitter transport]
GO:0006865 [amino acid transport]
GO:0007268 [chemical synaptic transmission]
GO:0008324 [cation transmembrane transporter activity]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0015175 [neutral amino acid transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015183 [L-aspartate transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015501 [glutamate:sodium symporter activity]
GO:0015804 [neutral amino acid transport]
GO:0015810 [aspartate transmembrane transport]
GO:0015813 [L-glutamate transmembrane transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0045111 [intermediate filament cytoskeleton]
GO:0046872 [metal ion binding]
GO:0098655 [cation transmembrane transport]
GO:0098712 [L-glutamate import across plasma membrane]
GO:0098796 [membrane protein complex]
GO:0140009 [L-aspartate import across plasma membrane]
Show all
312 aa
34.8 kDa
No 4
SLC1A6-209
ENSP00000472837
ENST00000599636
M0R2V7
[Direct mapping] Excitatory amino acid transporter 4
Show all
Metabolic proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
146 aa
15.1 kDa
No 0
SLC1A6-210
ENSP00000471038
ENST00000600144
M0R063
[Direct mapping] Amino acid transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0008324 [cation transmembrane transporter activity]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015711 [organic anion transport]
GO:0015807 [L-amino acid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0045111 [intermediate filament cytoskeleton]
GO:0055085 [transmembrane transport]
GO:0098655 [cation transmembrane transport]
GO:1902475 [L-alpha-amino acid transmembrane transport]
Show all
486 aa
53.2 kDa
No 8
SLC1A6-211
ENSP00000471129
ENST00000601761
M0R0B5
[Direct mapping] Excitatory amino acid transporter 4
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
74 aa
8.6 kDa
No 1

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