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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:122.6 nTPM
HPA Brain:42.9 nTPM
GTEx:122.6 nTPM
FANTOM5:161.5 Scaled Tags Per Million
Pig:86.1 nTPM
Mouse:68.0 nTPM
Allen mouse:0.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.9
Sample id Sample description nTPM
Amygdala
nTPM: 42.9
2814 Male, age 76, right hemisphere 54.6
2517 Female, age 94, left hemisphere 42.7
1987 Female, age 91, left hemisphere 41.4
2514 Male, age 75, right hemisphere 41.3
2695 Female, age 67, right hemisphere 34.7
Basal amygdala
nTPM: 39.1
2110 Male, age 80, left hemisphere 43.5
2609 Male, age 75, right hemisphere 43.1
1955 Male, age 76, both hemispheres 42.4
2685 Female, age 94, left hemisphere 40.9
2243 Female, age 91, right hemisphere 36.7
2827 Female, age 67, right hemisphere 27.9
Central amygdala
nTPM: 40.0
1905 Male, age 76, both hemispheres 48.4
2826 Female, age 94, left hemisphere 39.4
2239 Male, age 80, left hemisphere 38.7
2515 Male, age 75, right hemisphere 38.5
2701 Female, age 91, right hemisphere 34.8
Corticomedial amygdala
nTPM: 40.5
2829 Male, age 80, left hemisphere 46.3
2429 Female, age 94, left hemisphere 46.1
2242 Female, age 91, right hemisphere 41.5
2240 Male, age 76, both hemispheres 38.4
2428 Male, age 75, right hemisphere 37.5
2535 Female, age 67, right hemisphere 33.5
Lateral amygdala
nTPM: 37.0
1883 Male, age 76, both hemispheres 55.8
2534 Female, age 94, left hemisphere 43.0
2516 Male, age 75, right hemisphere 36.8
2256 Male, age 80, left hemisphere 30.1
2830 Female, age 67, right hemisphere 28.5
2255 Female, age 91, right hemisphere 27.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 122.6
Samples: 152

Max nTPM: 294.8
Min nTPM: 53.7
Std nTPM: 39.0
Median nTPM: 118.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 294.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 274.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 242.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 238.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 229.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 202.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 194.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 188.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 187.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 185.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 185.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 175.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 174.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 164.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 164.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 162.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 162.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 161.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 161.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 161.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 160.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 159.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 158.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 157.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 157.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 155.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 155.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 154.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 150.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 149.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 148.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 147.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 146.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 145.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 145.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 144.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 144.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 143.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 141.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 139.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 137.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 137.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 135.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 134.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 132.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 132.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 131.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 130.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 129.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 129.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 129.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 128.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 127.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 127.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 127.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 127.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 126.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 125.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 124.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 124.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 123.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 123.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 122.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 122.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 121.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 121.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 120.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 120.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 119.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 119.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 119.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 119.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 118.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 118.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 118.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 117.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 117.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 116.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 116.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 116.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 116.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 113.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 111.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 111.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 111.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 111.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 110.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 109.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 109.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 108.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 107.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 107.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 107.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 107.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 106.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 106.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 106.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 104.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 104.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 104.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 103.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 103.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 102.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 102.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 100.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 99.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 98.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 98.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 98.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 98.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 96.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 96.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 95.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 94.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 93.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 93.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 93.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 92.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 92.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 92.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 91.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 91.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 91.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 90.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 90.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 89.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 88.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 88.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 88.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 87.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 85.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 84.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 84.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 84.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 83.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 81.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 81.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 80.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 80.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 78.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 78.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 75.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 72.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 70.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 69.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 68.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 68.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 68.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 65.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 58.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 53.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

161.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 161.5
FF:10151-102I7 76 years, female 161.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.1
Pig sample Sample description nTPM
Amygdala
nTPM: 86.1
Samples: 4

Max nTPM: 100.7
Min nTPM: 64.1
Sample A Female 100.7
Sample B Female 84.4
Sample C Male 95.1
Sample D Male 64.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 68.0
Samples: 4

Max nTPM: 70.4
Min nTPM: 65.7
Sample A Male 65.7
Sample B Male 68.3
Sample C Female 70.4
Sample D Female 67.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.6
68844319 Antisense, RP_050222_01_D04, Mouse strain C57BL/6J (56 days, male) 0.6

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