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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1963.5 nTPM
GTEx:1963.5 nTPM
FANTOM5:1289.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA064222
Squamous epithelial cells High


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1963.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1963.5
Samples: 156

Max nTPM: 4308.7
Min nTPM: 928.0
Std nTPM: 509.5
Median nTPM: 1872.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4308.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3645.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3619.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3597.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3104.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3064.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3053.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2837.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2804.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2776.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2774.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2771.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2771.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2713.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2709.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2530.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2519.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2518.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2462.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2447.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2439.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2419.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2415.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2400.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2377.2
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2361.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2317.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2311.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2298.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2293.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2287.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2282.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2271.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2267.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2265.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2253.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2237.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2206.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2204.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2196.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2192.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2157.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2149.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2139.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2132.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2132.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2111.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2111.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2106.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2099.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2095.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2091.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2080.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2066.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2063.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2052.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2039.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2036.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2028.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2024.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2012.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2012.8
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2011.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2003.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1992.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1956.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1948.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1944.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1943.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1931.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1913.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1911.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1886.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1886.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1885.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1884.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1878.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1873.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1871.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1868.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1866.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1863.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1854.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1842.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1842.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1837.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1834.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1834.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1831.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1830.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1810.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1808.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1805.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1796.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1789.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1779.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1754.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1749.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1749.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1748.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1723.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1722.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1712.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 1695.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1695.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1691.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1677.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1669.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1668.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1665.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1653.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1646.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1644.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1640.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1633.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1621.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1618.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1605.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1592.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1587.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1586.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1584.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1570.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1565.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1558.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1554.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1545.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1543.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1532.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1514.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1497.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1495.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1488.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1484.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1459.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1457.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1451.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1448.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 1448.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1417.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1414.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1405.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1399.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1394.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1384.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1378.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1374.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1374.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1355.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1343.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1319.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1314.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1309.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1270.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1083.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 928.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1289.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1289.4
FF:10204-103F6 68 years, female 1289.4

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