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TIMM50
HPA
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  • TIMM50
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TIMM50
Synonyms TIM50, TIM50L
Gene descriptioni

Full gene name according to HGNC.

Translocase of inner mitochondrial membrane 50
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband q13.2
Chromosome location (bp) 39480412 - 39493785
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000105197 (version 109)
Entrez gene 92609
HGNC HGNC:23656
UniProt Q3ZCQ8 (UniProt - Evidence at protein level)
neXtProt NX_Q3ZCQ8
GeneCards TIMM50
Antibodypedia TIMM50 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Has some phosphatase activity in vitro; however such activity may not be relevant in vivo.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

RNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Protein transport, Translocation, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a subunit of the TIM23 inner mitochondrial membrane translocase complex. The encoded protein functions as the receptor subunit that recognizes the mitochondrial targeting signal, or presequence, on protein cargo that is destined for the mitochondrial inner membrane and matrix. This protein may also play a role in maintaining the membrane permeability barrier, and knockdown of this gene in human cells results in the release of cytochrome c and apoptosis. [provided by RefSeq, Jul 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TIMM50-201
ENSP00000445806
ENST00000544017
Q3ZCQ8
[Direct mapping] Mitochondrial import inner membrane translocase subunit TIM50
Show all
A0A024R0M6
[Target identity:100%; Query identity:100%] Mitochondrial import inner membrane translocase subunit TIM50
Show all
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001836 [release of cytochrome c from mitochondria]
GO:0003723 [RNA binding]
GO:0004721 [phosphoprotein phosphatase activity]
GO:0004722 [protein serine/threonine phosphatase activity]
GO:0004725 [protein tyrosine phosphatase activity]
GO:0005134 [interleukin-2 receptor binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005744 [TIM23 mitochondrial import inner membrane translocase complex]
GO:0006470 [protein dephosphorylation]
GO:0006886 [intracellular protein transport]
GO:0007006 [mitochondrial membrane organization]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016607 [nuclear speck]
GO:0030150 [protein import into mitochondrial matrix]
GO:0043021 [ribonucleoprotein complex binding]
Show all
456 aa
50.5 kDa
No 0
TIMM50-202
ENSP00000470994
ENST00000594583
M0R047
[Direct mapping] Mitochondrial import inner membrane translocase subunit TIM50
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004722 [protein serine/threonine phosphatase activity]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005744 [TIM23 mitochondrial import inner membrane translocase complex]
GO:0015031 [protein transport]
GO:0016020 [membrane]
Show all
227 aa
25 kDa
No 1
TIMM50-208
ENSP00000472723
ENST00000597666
M0R2Q2
[Direct mapping] Mitochondrial import inner membrane translocase subunit TIM50
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004722 [protein serine/threonine phosphatase activity]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005744 [TIM23 mitochondrial import inner membrane translocase complex]
GO:0015031 [protein transport]
GO:0016020 [membrane]
Show all
200 aa
22.8 kDa
No 0
TIMM50-212
ENSP00000472524
ENST00000599794
M0R2F8
[Direct mapping] Mitochondrial import inner membrane translocase subunit TIM50
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004722 [protein serine/threonine phosphatase activity]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005744 [TIM23 mitochondrial import inner membrane translocase complex]
GO:0015031 [protein transport]
GO:0016020 [membrane]
Show all
157 aa
17.7 kDa
No 0
TIMM50-216
ENSP00000472184
ENST00000601403
M0R1Y4
[Direct mapping] Mitochondrial import inner membrane translocase subunit TIM50
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004722 [protein serine/threonine phosphatase activity]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005744 [TIM23 mitochondrial import inner membrane translocase complex]
GO:0015031 [protein transport]
GO:0016020 [membrane]
Show all
256 aa
28.7 kDa
No 1
TIMM50-217
ENSP00000470896
ENST00000602028
M0R003
[Direct mapping] Mitochondrial import inner membrane translocase subunit TIM50
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004722 [protein serine/threonine phosphatase activity]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005744 [TIM23 mitochondrial import inner membrane translocase complex]
GO:0015031 [protein transport]
GO:0016020 [membrane]
Show all
257 aa
28.1 kDa
No 1
TIMM50-219
ENSP00000475531
ENST00000607714
Q3ZCQ8
[Direct mapping] Mitochondrial import inner membrane translocase subunit TIM50
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001836 [release of cytochrome c from mitochondria]
GO:0003723 [RNA binding]
GO:0004721 [phosphoprotein phosphatase activity]
GO:0004722 [protein serine/threonine phosphatase activity]
GO:0004725 [protein tyrosine phosphatase activity]
GO:0005134 [interleukin-2 receptor binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005744 [TIM23 mitochondrial import inner membrane translocase complex]
GO:0006470 [protein dephosphorylation]
GO:0006886 [intracellular protein transport]
GO:0007006 [mitochondrial membrane organization]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016607 [nuclear speck]
GO:0030150 [protein import into mitochondrial matrix]
GO:0043021 [ribonucleoprotein complex binding]
Show all
353 aa
39.6 kDa
No 1

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