We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GPI
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GPI
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:190.1 nTPM
FANTOM5:390.2 Scaled Tags Per Million
Pig:243.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA024305Antibody HPA052171Antibody CAB018655Antibody CAB040563Antibody CAB080077
Glial cells Not detectedMediumMediumNot detectedLow
Neuronal cells MediumMediumMediumHighMedium









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 190.1
Samples: 246

Max nTPM: 357.4
Min nTPM: 91.0
Std nTPM: 54.4
Median nTPM: 187.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 357.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 327.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 325.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 315.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 312.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 304.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 302.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 290.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 281.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 281.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 280.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 280.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 279.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 278.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 277.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 276.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 276.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 275.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 275.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 274.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 272.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 271.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 271.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 270.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 265.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 265.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 265.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 264.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 262.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 260.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 258.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 255.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 254.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 253.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 252.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 251.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 251.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 249.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 248.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 247.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 247.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 245.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 245.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 244.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 243.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 243.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 240.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 240.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 238.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 238.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 238.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 237.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 236.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 234.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 234.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 233.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 233.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 232.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 231.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 228.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 228.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 228.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 228.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 227.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 226.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 225.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 224.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 224.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 222.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 222.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 221.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 221.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 220.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 219.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 219.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 216.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 216.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 215.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 215.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 214.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 214.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 213.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 213.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 211.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 211.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 210.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 210.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 210.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 210.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 210.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 209.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 208.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 207.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 206.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 206.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 206.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 205.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 205.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 204.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 203.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 203.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 202.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 202.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 201.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 198.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 198.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 197.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 196.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 196.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 195.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 194.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 194.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 194.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 193.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 192.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 191.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 190.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 189.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 189.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 189.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 188.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 187.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 187.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 187.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 187.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 187.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 186.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 185.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 183.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 181.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 181.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 180.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 180.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 177.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 177.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 176.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 176.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 175.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 175.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 174.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 173.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 172.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 172.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 172.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 169.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 169.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 169.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 169.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 168.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 168.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 168.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 168.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 167.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 167.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 166.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 165.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 165.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 165.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 164.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 164.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 162.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 161.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 160.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 158.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 158.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 158.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 157.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 157.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 157.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 157.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 156.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 156.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 156.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 156.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 155.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 154.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 153.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 151.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 151.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 151.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 151.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 150.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 150.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 150.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 150.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 148.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 147.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 147.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 146.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 145.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 144.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 141.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 139.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 139.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 138.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 137.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 137.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 136.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 135.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 135.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 134.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 134.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 133.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 133.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 130.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 130.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 130.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 129.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 129.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 128.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 126.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 124.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 124.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 123.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 123.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 122.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 122.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 122.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 121.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 121.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 120.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 119.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 119.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 119.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 118.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 118.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 116.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 116.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 115.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 115.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 114.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 113.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 113.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 110.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 107.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 107.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 106.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 106.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 102.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 101.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 101.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 95.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 94.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 93.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 93.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 91.0
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

390.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 390.2
FF:10164-103B2 76 years, female 390.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.9
Pig sample Sample description nTPM
Caudate
nTPM: 243.9
Samples: 4

Max nTPM: 289.1
Min nTPM: 195.2
Sample A Female 195.2
Sample B Female 252.1
Sample C Male 289.1
Sample D Male 239.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org