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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:193.3 nTPM
GTEx:173.2 nTPM
FANTOM5:418.7 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA024305Antibody HPA052171Antibody CAB018655Antibody CAB040563Antibody CAB080077
Glial cells Not detectedMediumLowLowMedium
Neuronal cells MediumMediumMediumMediumNot detected










HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.3
Sample id Sample description nTPM
Hippocampus
nTPM: 193.3
1898 Male, age 80, left hemisphere 268.0
2621 Female, age 67, right hemisphere 207.0
1855 Male, age 76, left hemisphere 194.2
2148 Female, age 91, left hemisphere 186.7
2529 Female, age 94, left hemisphere 158.0
1911 Female, age 85, right hemisphere 145.7

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 173.2
Samples: 197

Max nTPM: 414.1
Min nTPM: 65.8
Std nTPM: 67.5
Median nTPM: 162.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 414.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 363.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 353.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 349.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 321.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 321.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 319.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 300.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 299.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 291.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 285.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 283.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 276.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 274.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 273.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 270.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 270.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 268.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 267.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 266.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 259.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 258.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 256.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 252.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 251.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 250.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 250.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 248.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 247.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 246.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 242.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 241.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 241.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 237.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 235.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 232.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 232.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 232.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 232.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 232.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 230.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 230.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 228.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 228.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 227.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 226.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 226.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 224.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 222.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 221.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 220.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 219.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 215.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 213.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 213.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 212.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 212.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 211.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 208.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 208.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 206.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 206.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 204.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 203.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 203.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 203.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 201.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 200.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 200.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 198.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 197.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 195.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 193.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 192.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 191.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 191.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 189.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 189.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 189.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 189.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 185.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 184.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 182.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 180.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 179.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 177.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 176.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 176.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 175.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 174.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 173.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 173.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 172.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 171.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 171.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 170.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 169.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 169.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 162.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 159.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 159.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 158.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 158.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 158.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 157.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 157.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 155.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 153.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 152.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 150.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 150.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 150.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 149.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 148.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 146.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 145.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 144.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 143.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 143.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 141.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 141.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 138.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 138.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 138.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 136.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 135.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 135.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 133.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 131.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 129.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 129.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 129.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 129.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 128.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 127.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 127.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 127.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 126.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 126.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 126.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 123.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 123.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 122.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 122.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 122.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 119.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 119.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 118.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 117.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 115.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 115.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 114.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 114.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 114.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 113.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 113.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 113.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 111.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 110.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 110.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 108.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 107.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 107.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 107.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 106.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 105.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 104.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 104.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 101.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 101.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 96.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 96.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 96.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 95.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 92.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 92.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 91.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 90.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 90.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 90.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 89.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 88.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 87.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 86.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 84.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 82.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 81.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 81.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 81.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 79.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 77.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 76.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 75.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 74.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 73.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 70.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 65.8
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

418.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 418.7
FF:10169-103B7 60 years, female 537.9
FF:10153-102I9 76 years, female 299.4

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