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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:164.1 nTPM
HPA Brain:244.5 nTPM
GTEx:164.1 nTPM
FANTOM5:134.5 Scaled Tags Per Million
Pig:311.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 228.9
2565 Male, age 75, midline 289.6
2194 Female, age 79, both hemispheres 284.4
1981 Female, age 72, midline 216.8
2816 Male, age 47, midline 205.5
2048 Male, age 55, midline 148.4
Cervical spinal cord, dorsal horn
nTPM: 244.5
2069 Male, age 47, both hemispheres 268.1
2297 Male, age 75, both hemispheres 260.9
2173 Female, age 72, unknown 240.9
1877 Male, age 55, unknown 235.2
2721 Male, age 90, both hemispheres 231.8
2296 Male, age 66, both hemispheres 229.8
Cervical spinal cord, ventral horn
nTPM: 229.7
2820 Female, age 79, both hemispheres 328.6
2068 Male, age 55, unknown 260.3
2480 Male, age 75, both hemispheres 236.4
2295 Male, age 66, both hemispheres 204.8
2809 Male, age 90, both hemispheres 194.1
2098 Female, age 72, unknown 153.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 164.1
Samples: 159

Max nTPM: 334.8
Min nTPM: 86.4
Std nTPM: 45.1
Median nTPM: 157.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 334.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 319.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 309.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 303.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 298.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 273.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 268.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 254.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 237.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 235.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 231.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 225.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 224.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 222.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 221.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 221.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 221.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 219.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 216.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 215.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 213.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 211.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 210.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 210.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 205.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 204.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 202.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 200.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 197.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 191.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 189.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 188.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 188.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 187.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 185.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 185.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 184.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 184.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 182.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 182.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 181.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 181.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 180.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 180.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 179.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 177.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 176.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 176.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 175.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 175.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 175.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 174.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 173.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 173.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 173.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 173.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 173.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 173.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 173.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 172.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 169.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 168.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 168.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 166.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 166.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 165.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 165.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 164.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 163.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 162.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 162.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 161.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 160.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 159.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 159.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 158.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 158.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 158.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 157.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 157.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 155.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 155.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 155.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 155.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 155.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 154.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 153.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 153.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 152.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 152.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 152.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 151.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 150.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 150.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 149.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 149.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 148.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 148.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 146.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 146.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 145.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 145.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 144.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 143.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 143.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 143.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 142.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 142.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 142.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 142.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 141.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 141.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 140.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 140.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 139.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 139.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 136.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 134.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 133.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 133.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 132.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 131.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 131.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 130.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 130.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 128.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 127.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 123.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 123.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 122.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 121.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 121.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 120.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 120.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 119.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 119.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 119.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 119.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 118.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 117.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 116.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 116.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 115.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 115.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 113.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 112.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 111.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 109.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 109.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 108.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 108.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 107.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 106.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 99.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 97.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 94.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 93.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 86.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

134.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 134.5
FF:10181-103D1 60 years, female 164.6
FF:10159-103A6 76 years, female 104.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 311.9
Samples: 4

Max nTPM: 448.4
Min nTPM: 206.4
Sample A Female 448.4
Sample B Female 220.5
Sample C Male 206.4
Sample D Male 372.2
Ventral spinal cord
nTPM: 276.8
Samples: 4

Max nTPM: 316.9
Min nTPM: 225.3
Sample A Female 290.4
Sample B Female 274.7
Sample C Male 316.9
Sample D Male 225.3

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